bm2-lab / scLearn
scLearn：Learning for single cell assignment
☆35Updated 4 months ago
Alternatives and similar repositories for scLearn:
Users that are interested in scLearn are comparing it to the libraries listed below
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆74Updated last year
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆29Updated 4 years ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆45Updated 4 months ago
- Gene group activity utility functions for Scanpy☆74Updated 4 months ago
- cTPnet Package☆25Updated 2 years ago
- ☆25Updated 3 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Tools used in Human Cell Landscape(HCL)☆54Updated 4 years ago
- ☆17Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- scWGCNA☆59Updated 2 years ago
- Reproducing result from the paper☆33Updated 3 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆34Updated 2 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 3 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆42Updated 7 months ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 2 years ago
- ☆10Updated last year
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 3 years ago
- Tumor Immune Single-cell Hub☆21Updated 4 years ago
- ACTIONet single-cell analysis framework☆38Updated 7 months ago
- Identifying tumor cells at the single-cell level using machine learning☆48Updated 5 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆35Updated last year
- ☆60Updated 5 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated 10 months ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- ☆26Updated 4 months ago
- ☆30Updated 2 years ago
- A portable and fast single cell type identifier☆64Updated 3 years ago