Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium. These files can be used as standard resource of BED files for use with GA4GH benchmarking tools such as hap.py to stratify true positive, false positive, and false negative variant calls based on genomic con…
☆85Nov 16, 2022Updated 3 years ago
Alternatives and similar repositories for genome-stratifications
Users that are interested in genome-stratifications are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A complete diploid human genome☆162Oct 19, 2026Updated 2 weeks ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆120Jun 6, 2021Updated 5 years ago
- Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)☆85Jun 10, 2022Updated 4 years ago
- Code used to generate manuscript figures and results.☆14Jan 10, 2024Updated 2 years ago
- Assemblies from HPP Year 1 production☆83May 9, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆34Jul 13, 2026Updated 3 months ago
- Working space for the GIAB TR benchmarking project☆26Oct 24, 2024Updated 2 years ago
- ☆12Jun 15, 2026Updated 4 months ago
- ☆149Oct 9, 2026Updated 3 weeks ago
- Structural variant toolkit for VCFs☆428Oct 3, 2026Updated last month
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆213Mar 19, 2021Updated 5 years ago
- Sample Contamination Estimate from VCF☆21Oct 23, 2026Updated last week
- Deep learning framework for SV calling and genotyping☆118Nov 8, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool for sniffing out the differences in vari-Ants☆58Updated this week
- ☆19Mar 14, 2022Updated 4 years ago
- vcfdist: Accurately benchmarking phased variant calls☆90Aug 28, 2026Updated 2 months ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆37Aug 18, 2025Updated last year
- Unfazed by genomic variant phasing☆29May 26, 2024Updated 2 years ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated last year
- The complete sequence of a human genome☆1,069Jul 3, 2026Updated 3 months ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆19Jul 11, 2022Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- PEPPER-Margin-DeepVariant☆260Jan 12, 2024Updated 2 years ago
- Jasmine: SV Merging Across Samples☆264Dec 20, 2024Updated last year
- ☆18Jan 29, 2025Updated last year
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- Long read / genome alignment software☆333Dec 16, 2025Updated 10 months ago
- Toolset for SV simulation, comparison and filtering☆426Dec 1, 2023Updated 2 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- drunk on perbase pileups and lua expressions☆19Nov 15, 2025Updated 11 months ago
- A tool for estimating repeat sizes☆219Jan 30, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Graph realignment tools for structural variants☆172Dec 8, 2022Updated 3 years ago
- This repository contains the reference genome assembly Ash1, built from data collected from an Ashkenazi individual.☆12Feb 2, 2022Updated 4 years ago
- Pangenome-based genome inference☆184Oct 26, 2026Updated last week
- Code repository for the T2T-Y paper☆25Jul 11, 2023Updated 3 years ago
- Detecting genome structural variants with deep learning in single molecule sequencing☆118Apr 9, 2025Updated last year
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆12Sep 28, 2026Updated last month
- Structural variant caller for low-depth long-read sequencing data☆50Feb 5, 2026Updated 8 months ago