Alternatives and similar repositories for genome-stratifications

Users that are interested in genome-stratifications are comparing it to the libraries listed below

• Illumina / ExpansionHunterDenovo
  A suite of tools for detecting expansions of short tandem repeats
  ☆82Updated 2 years ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆115Updated this week
• parklab / xTea
  Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
  ☆116Updated 2 months ago
• xjtu-omics / SVision
  Detecting genome structural variants with deep learning in single molecule sequencing
  ☆114Updated 5 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆124Updated last month
• KCCG / ClinSV
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
  ☆72Updated last year
• marbl / HG002
  A complete diploid human genome
  ☆126Updated last week
• gymreklab / GangSTR
  A tool for profiling long STRs from short reads
  ☆99Updated 4 years ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 5 years ago
• human-pangenomics / hpgp-data
  Data from the Human PanGenomics Project
  ☆60Updated 4 years ago
• human-pangenomics / HG002_Data_Freeze_v1.0
  Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)
  ☆80Updated 3 years ago
• odelaneau / shapeit5
  Segmented HAPlotype Estimation and Imputation Tool
  ☆86Updated 2 weeks ago
• dnanexus-archive / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆103Updated 4 years ago
• CenterForMedicalGeneticsGhent / WisecondorX
  WisecondorX — An evolved WISECONDOR
  ☆102Updated 3 weeks ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆125Updated 9 months ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆109Updated this week
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆103Updated 4 years ago
• Genotek / ClassifyCNV
  ClassifyCNV: a tool for clinical annotation of copy-number variants
  ☆66Updated 2 years ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆146Updated last month
• PacificBiosciences / sv-benchmark
  Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
  ☆51Updated 4 years ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆93Updated 2 months ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆145Updated last month
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆117Updated 5 months ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆158Updated 6 months ago
• tobiasrausch / alfred
  BAM Statistics, Feature Counting and Annotation
  ☆149Updated this week
• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆48Updated 5 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• svviz / svviz
  Read visualizer for structural variants
  ☆84Updated 7 years ago
• human-pangenomics / hpp_pangenome_resources
  ☆118Updated last year
• cortes-ciriano-lab / savana
  Somatic structural variant caller for long-read data
  ☆80Updated 3 months ago