arq5x / filoLinks
Useful FILe and stream Operations
☆45Updated 9 years ago
Alternatives and similar repositories for filo
Users that are interested in filo are comparing it to the libraries listed below
Sorting:
- Tools for bam file processing☆55Updated 10 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Fast fusion detection using kallisto☆79Updated 4 months ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- CRAM format specification and java API for read data.☆60Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- ☆36Updated 5 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Updated 14 years ago
- ☆38Updated 8 months ago
- ☆78Updated 11 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- Tools to process LIANTI sequence data☆23Updated 6 years ago
- Bioinformatics tool outputs converter to JSON or YAML☆35Updated 4 months ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Maximum likelihood demultiplexing☆48Updated 8 months ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago
- Response to blog post about Salmon☆37Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- An awk-like VCF parser☆56Updated last year
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago