biocore / horizomer
Workflow for detecting genome-wide horizontal gene transfers
☆11Updated 6 years ago
Related projects: ⓘ
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆19Updated 3 years ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆19Updated 2 years ago
- Long read metagenomics practical at EBAME18☆18Updated 5 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆24Updated 2 years ago
- Predict plasmids from uncorrected long read data☆39Updated 4 years ago
- ☆32Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆42Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆38Updated 4 years ago
- ☆51Updated 3 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆37Updated last year
- Gene-flank analysis tool☆25Updated 4 months ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆28Updated 6 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆25Updated 11 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆45Updated last year
- ☆23Updated 5 years ago
- STAG: Species Tree from All Genes☆31Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆41Updated 11 months ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆29Updated 4 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 4 years ago
- Rank-based Gene Ontology analysis of gene expression data☆38Updated last year
- reference-based long read assemblies of bacterial genomes☆46Updated 3 years ago
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Updated 6 years ago
- ☆43Updated 2 months ago
- ☆13Updated 6 years ago
- Improvement of metagenome-assembled genomes☆48Updated 4 years ago
- ☆21Updated 10 years ago
- Automatic Assembly For The Fungi☆19Updated last year
- R package for comparison of synteny conservation at the genome-wide scale.☆13Updated 3 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆51Updated last year