biocore / horizomerLinks
Workflow for detecting genome-wide horizontal gene transfers
☆10Updated 7 years ago
Alternatives and similar repositories for horizomer
Users that are interested in horizomer are comparing it to the libraries listed below
Sorting:
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 4 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Automatic evaluation of HGTs☆29Updated 4 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- ☆36Updated 3 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆19Updated 3 years ago
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- ☆26Updated 5 years ago
- Mobile Genetic Elements Retrieving Tool☆15Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Scripts and documentations on the MCSC decontamination method☆9Updated 2 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 5 years ago
- ☆32Updated 4 years ago
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Updated 7 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated 2 years ago
- Split Kmer Analysis☆65Updated 3 years ago