mozack / abraLinks
Assembly Based ReAligner
☆74Updated 7 years ago
Alternatives and similar repositories for abra
Users that are interested in abra are comparing it to the libraries listed below
Sorting:
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- ☆55Updated 5 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆90Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆68Updated 11 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 8 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Updated 5 years ago
- ☆91Updated 4 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago
- An awk-like VCF parser☆56Updated 2 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆76Updated 6 months ago
- Concordance and contamination estimator for tumor–normal pairs☆59Updated last year
- ☆46Updated 6 years ago
- Structural Variant Index☆75Updated last year
- ☆96Updated 3 years ago
- ABRA2☆95Updated 3 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Updated 6 years ago
- 10x Genomics Reads Simulator☆46Updated 2 years ago
- Platypus Variant Caller☆108Updated last year
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Updated 5 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated 2 months ago
- High-performance error correction for Illumina resequencing data☆74Updated 9 years ago
- ☆78Updated 11 years ago