Assembly Based ReAligner
☆75May 24, 2018Updated 7 years ago
Alternatives and similar repositories for abra
Users that are interested in abra are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ABRA2☆95Dec 2, 2022Updated 3 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32May 31, 2016Updated 9 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- Platypus Variant Caller☆107Jun 27, 2024Updated last year
- iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient☆14Aug 18, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 7 years ago
- The integrated pipeline for Indel detection☆17Apr 29, 2018Updated 7 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Oct 6, 2020Updated 5 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago
- a string to graph aligner☆41Jul 5, 2016Updated 9 years ago
- A tool set for short variant discovery in genetic sequence data.☆204May 4, 2021Updated 4 years ago
- Python interface to the GenoLogics LIMS server via its REST API.☆11Mar 30, 2022Updated 4 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆247Oct 18, 2024Updated last year
- Multi-sample somatic variant caller☆52Jan 27, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- a lightweight db framework for exploring genetic variation.☆327Apr 28, 2020Updated 5 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆138Sep 16, 2025Updated 6 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Feb 23, 2023Updated 3 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Sep 16, 2021Updated 4 years ago
- BIC@MSKCC Variants Pipeline☆23Mar 28, 2023Updated 3 years ago
- RNA mapping pipeline☆18Jun 3, 2018Updated 7 years ago
- ☆92Jan 11, 2022Updated 4 years ago
- Structural variation and indel detection by local assembly☆255Mar 17, 2026Updated 3 weeks ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Jun 27, 2022Updated 3 years ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Jan 27, 2020Updated 6 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 2 years ago
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆299Aug 22, 2018Updated 7 years ago
- Population Reference Graphs for the HLA and MHC.☆35Dec 18, 2018Updated 7 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆57Mar 29, 2021Updated 5 years ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Tools for early stage alignment file processing☆96Mar 12, 2019Updated 7 years ago
- ☆21Dec 26, 2025Updated 3 months ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 6 years ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- Mutation Spectra Analysis☆10Mar 15, 2018Updated 8 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Jun 25, 2019Updated 6 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago