mozack / abraLinks
Assembly Based ReAligner
☆74Updated 7 years ago
Alternatives and similar repositories for abra
Users that are interested in abra are comparing it to the libraries listed below
Sorting:
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- 10x Genomics Reads Simulator☆46Updated last year
- Structural Variant Index☆75Updated 11 months ago
- ☆55Updated 5 years ago
- UCSC Nanopore☆44Updated 6 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆67Updated 11 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Updated 8 years ago
- An awk-like VCF parser☆56Updated last year
- Data and information about the Polaris study☆54Updated 6 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Updated 6 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated last year
- ABRA2☆95Updated 3 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- A collection of command line tools for working with sequencing data☆52Updated 2 weeks ago
- ☆96Updated 3 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Updated 5 years ago
- ☆91Updated 3 years ago