Alternatives and similar repositories for metablastr:

Users that are interested in metablastr are comparing it to the libraries listed below

• YuLab-SMU / tidytree
  A Tidy Tool for Phylogenetic Tree Data Manipulation
  ☆55Updated 7 months ago
• gmbecker / genbankr
  ☆19Updated last year
• fkeck / bioseq
  A Toolbox for Manipulating Biological Sequences in R
  ☆22Updated 2 years ago
• gosling-lang / grosling
  R interface to 'Gos'
  ☆38Updated 2 years ago
• tbradley1013 / tree-subset-shiny
  This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees
  ☆15Updated 6 years ago
• omicsCore / SEQprocess
  SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
  ☆17Updated 4 years ago
• lindsayrutter / bigPint
  Bioconductor package that makes BIG data pint-sized.
  ☆21Updated last year
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆21Updated 2 years ago
• gogleva / SecretSanta
  flexible pipelines for scalable secretome prediction, R package
  ☆12Updated 6 years ago
• markrobinsonuzh / TreeSummarizedExperiment
  An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension
  ☆13Updated this week
• mcalgaro93 / sc2meta
  Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…
  ☆10Updated 4 years ago
• wejlab / MetaScope
  An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)
  ☆16Updated last month
• shaunpwilkinson / kmer
  K-mer Counting for Biological Sequence Analysis
  ☆27Updated 5 years ago
• statdivlab / tinyvamp
  ☆19Updated last year
• Bioconductor / GenomicRanges
  Representation and manipulation of genomic intervals
  ☆44Updated 3 months ago
• pcastellanoescuder / POMA
  Omics Data Analysis Tools
  ☆11Updated 3 months ago
• YuLab-SMU / treedataverse
  Meta package for processing and visualizing tree with data
  ☆27Updated 3 years ago
• GMOD / JBrowseR
  R interface to the JBrowse 2 Linear Genome View.
  ☆35Updated last year
• microbiome / mia
  Microbiome analysis
  ☆52Updated this week
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated 9 months ago
• federicomarini / ideal
  Interactive Differential Expression AnaLysis - DE made accessible and reproducible
  ☆29Updated this week
• joey711 / shiny-phyloseq
  An interactive web application for demonstrating and using phyloseq.
  ☆60Updated 5 years ago
• csoneson / treeclimbR
  ☆20Updated 2 months ago
• gschofl / reutils
  Talk to the NCBI EUtils
  ☆22Updated 4 years ago
• datacarpentry / genomics-r-intro
  Intro to R and RStudio for Genomics
  ☆28Updated this week
• CharlieCarpenter / tidyMicro
  tidyMicro GitHup Repository
  ☆17Updated 3 years ago
• ying14 / yingtools2
  Ying's tools for analysis, with particular focus on microbiome data
  ☆41Updated 2 months ago
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆23Updated last year
• BgeeDB / BgeeDB_R
  Source code of the R packge BgeeDB to use data from the Bgee database
  ☆15Updated last month
• Bioconductor / Biostrings
  Efficient manipulation of biological strings
  ☆62Updated 2 weeks ago