Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
☆214May 14, 2020Updated 6 years ago
Alternatives and similar repositories for AfterQC
Users that are interested in AfterQC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Detect and visualize target mutations by scanning FastQ files directly☆157Feb 10, 2022Updated 4 years ago
- Pattern Recognition for Cell-free DNA☆59Aug 3, 2018Updated 7 years ago
- Query Mutated Reads from a Bam☆26Nov 26, 2018Updated 7 years ago
- (No maintenance) Detect gene fusion directly from raw fastq files☆25Aug 13, 2017Updated 8 years ago
- (No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia☆66Jul 18, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- (No maintenance) Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated☆24Aug 10, 2017Updated 8 years ago
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆127Oct 27, 2023Updated 2 years ago
- Gene fusion detection and visualization☆132Feb 21, 2022Updated 4 years ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,374Jun 1, 2026Updated last week
- Please switch to https://github.com/OpenGene/defastq☆29Jul 28, 2018Updated 7 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆167Mar 28, 2023Updated 3 years ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,459May 20, 2026Updated 3 weeks ago
- Deduplication for cfDNA sequencing data☆11Jul 5, 2017Updated 8 years ago
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- lumpy: a general probabilistic framework for structural variant discovery☆342Feb 22, 2026Updated 3 months ago
- Tools for working with SAM/BAM data☆610Dec 22, 2024Updated last year
- Cutadapt removes adapter sequences from sequencing reads☆581Apr 6, 2026Updated 2 months ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 7 years ago
- Strelka2 germline and somatic small variant caller☆394Apr 20, 2026Updated last month
- Detect and visualize microsatellite instability(MSI) from NGS data☆33Jun 4, 2019Updated 7 years ago
- Simple FASTQ quality assessment using Python☆109Feb 24, 2026Updated 3 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆522Updated this week
- Tools for processing UMI RNA-tag data☆132Apr 30, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,030Aug 24, 2024Updated last year
- BEDOPS: high-performance genomic feature operations☆369Apr 29, 2025Updated last year
- Tools for next-generation sequencing analysis☆89Jun 25, 2019Updated 6 years ago
- Structural variant and indel caller for mapped sequencing data☆466Oct 11, 2025Updated 7 months ago
- VarDict☆204Jan 5, 2024Updated 2 years ago
- A fast lossless FASTQ compressor with ultra-high compression ratio☆152May 28, 2025Updated last year
- Toolkit for processing sequences in FASTA/Q formats☆1,541Jun 1, 2025Updated last year
- Create Bloom filters for a given reference and then use it to categorize sequences☆78Nov 26, 2024Updated last year
- Tools for working with genomic and high throughput sequencing data.☆368May 20, 2026Updated 3 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126May 4, 2026Updated last month
- a lightweight bam file depth statistical tool☆162Sep 13, 2024Updated last year
- Assembling the cause of phenotypes and genotypes from NGS data☆29Jun 11, 2020Updated 5 years ago
- FRAMA: From RNA-seq data to annotated mRNA assemblies☆12Sep 28, 2018Updated 7 years ago
- Java utilities for Bioinformatics☆522May 7, 2026Updated last month
- bedtools - the swiss army knife for genome arithmetic☆1,038Mar 11, 2025Updated last year
- a lightweight db framework for exploring genetic variation.☆329Apr 28, 2020Updated 6 years ago