OpenGene / AfterQCLinks
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
☆212Updated 5 years ago
Alternatives and similar repositories for AfterQC
Users that are interested in AfterQC are comparing it to the libraries listed below
Sorting:
- Count bases in BAM/CRAM files☆323Updated 4 years ago
- A flexible framework for rapid genome analysis and interpretation☆319Updated 3 years ago
- BEDOPS: high-performance genomic feature operations☆359Updated 9 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆337Updated 3 years ago
- Detect and visualize target mutations by scanning FastQ files directly☆157Updated 3 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆256Updated 6 months ago
- Read trimming tool for Illumina NGS data.☆149Updated 10 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆278Updated 2 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆262Updated 2 years ago
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆160Updated 3 years ago
- VarDict☆201Updated 2 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆259Updated 4 months ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆203Updated last month
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆233Updated 3 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆263Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆232Updated 6 months ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆396Updated 5 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆285Updated last year
- Structural variation and indel detection by local assembly☆251Updated 4 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆279Updated 8 months ago
- Documentation for the ANNOVAR software☆245Updated 6 months ago
- Gene fusion detection and visualization☆131Updated 3 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆175Updated last year
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆238Updated 4 years ago
- GFF and GVF specification documents☆219Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆129Updated 5 years ago
- A structural variation pipeline for short-read sequencing☆201Updated this week
- Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.☆148Updated 4 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆250Updated this week