OpenGene / fastvLinks
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
☆118Updated 2 years ago
Alternatives and similar repositories for fastv
Users that are interested in fastv are comparing it to the libraries listed below
Sorting:
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- A package for designing compact and comprehensive capture probe sets.☆92Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 4 months ago
- Match up paired end fastq files quickly and efficiently.☆152Updated last year
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆112Updated last year
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆118Updated 5 years ago
- Tools for plotting methylation data in various ways☆165Updated 2 weeks ago
- ☆123Updated 4 months ago
- A suite of tools for detecting expansions of short tandem repeats☆83Updated 2 years ago
- BAM Statistics, Feature Counting and Annotation☆151Updated last week
- ☆142Updated 2 weeks ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆109Updated 2 weeks ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated last week
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆126Updated 2 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 4 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆251Updated 4 months ago
- Gene fusion detection and visualization☆127Updated 3 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 7 months ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆145Updated 9 years ago
- Research release basecalling models and configurations☆117Updated 6 months ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆82Updated 3 years ago
- SV detection from paired end reads mapping☆117Updated 6 years ago
- A minimap2 frontend for PacBio native data formats☆207Updated 3 weeks ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆159Updated 9 months ago
- A structural variation pipeline for short-read sequencing☆196Updated last week