OpenGene / fastvLinks
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
☆118Updated last year
Alternatives and similar repositories for fastv
Users that are interested in fastv are comparing it to the libraries listed below
Sorting:
- A package for designing compact and comprehensive capture probe sets.☆89Updated last year
- Match up paired end fastq files quickly and efficiently.☆152Updated last year
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆118Updated 4 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- ☆123Updated 3 weeks ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆141Updated last month
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- ☆132Updated 2 weeks ago
- An ultra-fast and efficient genomic tool for coverage calculation☆157Updated 5 months ago
- accurate LiftOver tool for new genome assemblies☆134Updated last year
- Python programs for processing GFF3 files☆99Updated last year
- Whole Genome Simulator for Next-Generation Sequencing☆101Updated 8 months ago
- a tool for inferring species tree from sequencing reads☆150Updated 2 weeks ago
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆109Updated last year
- Dfam Transposable Element Tools Docker container.☆100Updated last week
- BAM Statistics, Feature Counting and Annotation☆149Updated last week
- ☆102Updated 3 weeks ago
- Tools for plotting methylation data in various ways☆160Updated 2 weeks ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 3 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆57Updated 2 years ago
- PCR Primer Quality Control☆66Updated 3 weeks ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆195Updated 3 weeks ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆156Updated 6 months ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆144Updated 8 years ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆81Updated 2 years ago
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆121Updated last year
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆145Updated last month
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆113Updated 3 months ago