EtieM / outLyzerLinks
An efficient Variant-Caller to highlight low allele-frequency tumor mutations in a clinical practice
☆11Updated 2 years ago
Alternatives and similar repositories for outLyzer
Users that are interested in outLyzer are comparing it to the libraries listed below
Sorting:
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 5 years ago
- ☆46Updated 5 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Updated 9 months ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- ☆26Updated last year
- Concordance and contamination estimator for tumor–normal pairs☆58Updated 11 months ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 3 weeks ago
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated 2 weeks ago
- DriverPower☆26Updated 8 months ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 3 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 7 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- QDNAseq package for Bioconductor☆52Updated last year
- ☆35Updated 5 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated 2 years ago
- ☆38Updated 4 years ago
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆20Updated 6 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 2 months ago
- An R package for predicting HR deficiency from mutation contexts☆29Updated 7 months ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 8 years ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago