EtieM / outLyzerLinks
An efficient Variant-Caller to highlight low allele-frequency tumor mutations in a clinical practice
☆11Updated 2 years ago
Alternatives and similar repositories for outLyzer
Users that are interested in outLyzer are comparing it to the libraries listed below
Sorting:
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- ☆46Updated 5 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated last month
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- ☆24Updated 10 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- DriverPower☆26Updated 4 months ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- ☆19Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 10 months ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- cnv-seq with custom bugfix☆10Updated 12 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 3 months ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Updated 5 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 11 months ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 3 years ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆9Updated last year
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 6 years ago