brwnj / fastq-multx
Demultiplexes a fastq.
☆42Updated 3 years ago
Related projects: ⓘ
- tools to find circRNAs in RNA-seq data☆40Updated 6 years ago
- A Perl/R pipeline for plotting metagenes☆34Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆64Updated 5 years ago
- Tutorial Website☆51Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆34Updated 2 years ago
- ☆49Updated 3 years ago
- ☆29Updated 6 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆24Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆29Updated 5 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆31Updated 5 years ago
- RNA editing quantification in deep transcriptome data☆15Updated last year
- A toolset for profiling alternative splicing events in RNA-Seq data.☆77Updated 2 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆47Updated 4 years ago
- Find circRNAs in RNA-seq data.☆13Updated 8 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆23Updated 3 weeks ago
- CLIP-seq Analysis of Multi-mapped reads☆27Updated 3 years ago
- Unofficial repo for software vendoring or packaging purposes☆19Updated 6 years ago
- Estimate locus specific human LINE-1 expression.☆31Updated last year
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆31Updated 5 months ago
- Pipeline for Somatic Variant Calling with WES and WGS data☆20Updated 4 months ago
- ATAC-seq processing pipeline☆31Updated 2 years ago
- ☆38Updated this week
- Updated DANPOS2 to work with python3☆20Updated 6 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆26Updated 5 years ago
- Links to ATAC-seq analysis tools☆49Updated 3 years ago
- A list of alternative splicing analysis resources☆33Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆43Updated 8 months ago
- Detecting intron retention from RNA-Seq experiments☆52Updated 2 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆42Updated 7 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆45Updated 5 years ago