OpenGene / gencoreLinks
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
☆122Updated last year
Alternatives and similar repositories for gencore
Users that are interested in gencore are comparing it to the libraries listed below
Sorting:
- Gene fusion detection and visualization☆128Updated 3 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆162Updated 10 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆160Updated 2 years ago
- ABRA2☆92Updated 2 years ago
- WisecondorX — An evolved WISECONDOR☆99Updated last week
- microsatellite instability detection using tumor only or paired tumor-normal data☆131Updated 4 years ago
- Structural variation and indel detection by local assembly☆247Updated 2 weeks ago
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- a lightweight bam file depth statistical tool☆150Updated 10 months ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated last year
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Software program for checking sample matching for NGS data☆134Updated last year
- VarDict☆198Updated last year
- A structural variation pipeline for short-read sequencing☆189Updated this week
- Workflows for germline short variant discovery with GATK4☆137Updated 4 years ago
- Annotation and Ranking of Structural Variation☆261Updated last week
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆224Updated 3 years ago
- BAM Statistics, Feature Counting and Annotation☆150Updated 3 weeks ago
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆109Updated last year
- pbsv - PacBio structural variant (SV) calling and analysis tools☆154Updated 4 months ago
- SV detection from paired end reads mapping☆117Updated 5 years ago
- A suite of tools for detecting expansions of short tandem repeats☆82Updated 2 years ago
- ☆123Updated 8 months ago
- Tools for processing and analyzing structural variants.☆153Updated 3 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆215Updated last week
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆118Updated 4 years ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆202Updated 3 months ago
- Jasmine: SV Merging Across Samples☆217Updated 6 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago