Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
☆127Oct 27, 2023Updated 2 years ago
Alternatives and similar repositories for gencore
Users that are interested in gencore are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Gene fusion detection and visualization☆133Feb 21, 2022Updated 4 years ago
- Detect and visualize target mutations by scanning FastQ files directly☆157Feb 10, 2022Updated 4 years ago
- A fast lossless FASTQ compressor with ultra-high compression ratio☆155May 28, 2025Updated last year
- Query Mutated Reads from a Bam☆26Nov 26, 2018Updated 7 years ago
- Detect and visualize microsatellite instability(MSI) from NGS data☆33Jun 4, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆213May 14, 2020Updated 6 years ago
- Please switch to https://github.com/OpenGene/defastq☆29Jul 28, 2018Updated 8 years ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,436Updated this week
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆17Dec 10, 2019Updated 6 years ago
- An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infect…☆120Oct 27, 2023Updated 2 years ago
- Pattern Recognition for Cell-free DNA☆59Aug 3, 2018Updated 8 years ago
- a lightweight bam file depth statistical tool☆163Jul 2, 2026Updated 3 months ago
- Generate unique KMERs for every contig in a FASTA file☆49Aug 17, 2022Updated 4 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆346Feb 22, 2026Updated 7 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- VarDict☆204Jan 5, 2024Updated 2 years ago
- Short reads aligner for NIPT/CNV☆16Oct 10, 2018Updated 8 years ago
- Deduplication for cfDNA sequencing data☆11Jul 5, 2017Updated 9 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆117Apr 2, 2025Updated last year
- verifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆111Sep 25, 2026Updated 2 weeks ago
- Strelka2 germline and somatic small variant caller☆393Apr 20, 2026Updated 5 months ago
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆116Mar 28, 2024Updated 2 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆537Oct 1, 2026Updated last week
- The next version of bwa-mem☆862Oct 15, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 8 years ago
- BWA-MEME: Faster BWA-MEM2 using learned-index☆138Jun 3, 2026Updated 4 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Apr 20, 2026Updated 5 months ago
- Tools for working with SAM/BAM data☆613Dec 22, 2024Updated last year
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- myVCF: a web-based platform for target and exome mutations data management☆21Apr 13, 2021Updated 5 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆878May 2, 2026Updated 5 months ago
- [DEPRECATED] MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆22Aug 13, 2026Updated last month
- Workflows for germline short variant discovery with GATK4☆145May 7, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SIMD partial order alignment tool/library☆186Updated this week
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 5 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆25Oct 6, 2020Updated 6 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆133Jan 6, 2021Updated 5 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆45Nov 20, 2019Updated 6 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆403Jun 16, 2026Updated 3 months ago