Alternatives and similar repositories for sv-benchmark

Users that are interested in sv-benchmark are comparing it to the libraries listed below

• shilpagarg / DipAsm
  ☆78Updated 5 years ago
• Nucleomics-VIB / bionano-tools
  Custom tools to 'facilitate' BioNano Genomics data analysis
  ☆34Updated 6 years ago
• AppliedBioinformatics / runBNG
  An easy way to run BioNano genomic analysis
  ☆28Updated 4 years ago
• mcfrith / tandem-genotypes
  ☆48Updated last year
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• MeHelmy / princess
  ☆81Updated 7 months ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆103Updated 4 years ago
• TheJacksonLaboratory / Picky
  Structural Variants Pipeline for Long Reads
  ☆44Updated 7 years ago
• Nextomics / nextsv
  ☆37Updated last year
• HullUni-bioinformatics / TE-search-tools
  Python wrappers for programs that search for transposable elements
  ☆19Updated 9 years ago
• shingocat / lrscaf
  TGS scaffolding
  ☆47Updated 3 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆39Updated 2 months ago
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆60Updated 9 months ago
• PacificBiosciences / sv-benchmark
  Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
  ☆51Updated 4 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆48Updated 2 years ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 7 years ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 5 months ago
• BGI-Qingdao / stlfr2supernova_pipeline
  A pipeline to de novo assemble the stLFR reads using Supernova Assembler
  ☆20Updated 2 years ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆13Updated 8 months ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆39Updated 7 years ago
• wangyibin / CPhasing
  C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.
  ☆60Updated 3 months ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆34Updated last year
• jason-weirather / AlignQC
  Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…
  ☆49Updated 7 years ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆51Updated 2 months ago
• vgteam / sv-genotyping-paper
  ☆31Updated 5 years ago
• aubombarely / Organelle_PBA
  A software to assemble chloroplast and mitochodrial genomes using PacBio data
  ☆40Updated 5 years ago
• yywan0913 / SVhawkeye
  ☆32Updated last year
• kakitone / finishingTool
  finshingTool
  ☆54Updated 8 years ago