tjiangHIT / sv-benchmark
Public Benchmark of Long-Read Structural Variant Caller on ONT PromethION Data
☆11Updated 5 years ago
Alternatives and similar repositories for sv-benchmark:
Users that are interested in sv-benchmark are comparing it to the libraries listed below
- ☆48Updated 6 months ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- ☆26Updated last year
- A pipeline for isoseq☆23Updated 6 years ago
- Variant annotation and merging pipeline☆31Updated last week
- calling SVs from Blasr contig level alignments☆54Updated 6 years ago
- ☆33Updated 9 months ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- ☆42Updated 8 months ago
- ☆79Updated 8 months ago
- TGS scaffolding☆46Updated 3 years ago
- Detection and genotyping of structural variants☆18Updated 2 months ago
- A pipeline to de novo assemble the stLFR reads using Supernova Assembler☆20Updated last year
- Structural variant caller☆54Updated 3 years ago
- ☆43Updated 8 years ago
- Structural Variants Pipeline for Long Reads☆44Updated 6 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- ☆31Updated 5 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆48Updated 3 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- ☆76Updated 4 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆45Updated 11 months ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- ☆28Updated 2 weeks ago
- ☆27Updated 5 months ago