Public Benchmark of Long-Read Structural Variant Caller on ONT PromethION Data
☆14Nov 28, 2019Updated 6 years ago
Alternatives and similar repositories for sv-benchmark
Users that are interested in sv-benchmark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Calling deletions using deep convolutional neural☆24Feb 12, 2020Updated 6 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Mar 4, 2019Updated 7 years ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated last year
- Mark duplicate reads from PacBio sequencing of an amplified library☆12Feb 26, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Structural variant caller for low-depth long-read sequencing data☆48Feb 5, 2026Updated last month
- ☆36Jan 14, 2024Updated 2 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Nov 13, 2023Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Sep 14, 2020Updated 5 years ago
- rMETL - realignment-based Mobile Element insertion detection Tool for Long read☆21Aug 13, 2024Updated last year
- ultrafast structural variation detection from circular consensus sequencing reads☆13Mar 8, 2022Updated 4 years ago
- GPU-accelerated guppy basecalling and demultiplexing on Linux☆18Jul 31, 2023Updated 2 years ago
- Tool comparison for detecting differentially expressed individual transposable elements☆11Jan 7, 2022Updated 4 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆37Feb 19, 2021Updated 5 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- SV genotyper for long reads with a variation graph☆16Aug 11, 2025Updated 7 months ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- ☆11Sep 28, 2021Updated 4 years ago
- ☆78Jun 12, 2020Updated 5 years ago
- Scripts to handle NGS data and other biological data☆22Jan 24, 2024Updated 2 years ago
- 批量直播录制flv文件转mp4☆11Jun 25, 2022Updated 3 years ago
- Standard operating procedures for H3ABionet data processing and analyses☆11Aug 30, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆12Apr 2, 2021Updated 4 years ago
- Archived version 1.0.2☆16Nov 25, 2019Updated 6 years ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Nov 1, 2024Updated last year
- ☆36Apr 13, 2024Updated last year
- ☆13Sep 4, 2021Updated 4 years ago
- Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…☆37Jul 11, 2025Updated 8 months ago
- Tumor-normal variant calling workflow using HiFi reads☆29Mar 4, 2026Updated 3 weeks ago
- ☆17Sep 28, 2022Updated 3 years ago
- An easy way to run BioNano genomic analysis☆28Apr 9, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30May 10, 2018Updated 7 years ago
- CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences☆12Aug 21, 2025Updated 7 months ago
- Workflow Description Language - Specification and Implementations☆27Mar 19, 2019Updated 7 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Apr 9, 2022Updated 3 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Please switch to https://github.com/OpenGene/defastq☆29Jul 28, 2018Updated 7 years ago
- ☆15Jun 6, 2023Updated 2 years ago