OpenGene / MutScan
Detect and visualize target mutations by scanning FastQ files directly
☆151Updated 3 years ago
Alternatives and similar repositories for MutScan:
Users that are interested in MutScan are comparing it to the libraries listed below
- Gene fusion detection and visualization☆122Updated 3 years ago
- VarDict☆197Updated last year
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆209Updated 4 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆157Updated 2 years ago
- a lightweight bam file depth statistical tool☆150Updated 7 months ago
- A tool set for short variant discovery in genetic sequence data.☆196Updated 3 years ago
- Pattern Recognition for Cell-free DNA☆59Updated 6 years ago
- A flexible framework for rapid genome analysis and interpretation☆316Updated 2 years ago
- Structural variation and indel detection by local assembly☆244Updated last month
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆120Updated last year
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆267Updated last year
- SV detection from paired end reads mapping☆117Updated 5 years ago
- Tools for processing and analyzing structural variants.☆151Updated 2 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆215Updated 9 months ago
- Annotation and Ranking of Structural Variation☆250Updated last month
- tools for adding mutations to existing .bam files, used for testing mutation callers☆239Updated 5 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆159Updated 7 months ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆196Updated last week
- Count bases in BAM/CRAM files☆315Updated 3 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆372Updated last year
- structural variant calling and genotyping with existing tools, but, smoothly.☆248Updated 9 months ago
- lumpy: a general probabilistic framework for structural variant discovery☆323Updated 2 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆203Updated 4 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆145Updated 2 years ago
- Bayesian genotyper for structural variants☆131Updated 4 years ago
- Workflows for germline short variant discovery with GATK4☆134Updated 3 years ago
- A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline☆192Updated last year
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated 10 months ago
- ABRA2☆92Updated 2 years ago
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆145Updated this week