cobilab / smash
A tool to find and visualize rearrangements in DNA sequences
☆16Updated 5 years ago
Alternatives and similar repositories for smash:
Users that are interested in smash are comparing it to the libraries listed below
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 3 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 6 months ago
- Identifying repeats in high-throughput sequencing data☆16Updated 11 months ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- ☆19Updated last year
- Tool for visualising assemblies.☆17Updated 9 years ago
- A Nextflow pipeline for running synteny analysis.☆14Updated 3 weeks ago
- ☆16Updated 11 months ago
- A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.☆12Updated 2 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Bayesian reconstruction of ancient DNA fragments☆28Updated 7 months ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- The shiny app that accompanies the ngsReports R package☆14Updated 3 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- Functions to compare a SV call sets against a truth set.☆29Updated 11 months ago
- ☆32Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- genomic alignment similarity search tool☆18Updated 10 months ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆26Updated 3 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- Kmer Analysis of Pileups for Genotyping☆21Updated last month
- Identification of segmental duplications in the genome☆26Updated 3 years ago
- ☆15Updated 7 years ago