Alternatives and similar repositories for TOSICA

Users that are interested in TOSICA are comparing it to the libraries listed below

• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆57Updated 11 months ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆77Updated 9 months ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆125Updated 2 months ago
• LewisLabUCSD / Ligand-Receptor-Pairs
  Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
  ☆130Updated 2 years ago
• Durenlab / LINGER
  ☆103Updated last week
• ZJUFanLab / scDeepSort
  Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
  ☆103Updated last year
• jsxlei / SCALE
  Single-cell ATAC-seq analysis via Latent feature Extraction
  ☆102Updated last year
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆95Updated 2 months ago
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆53Updated 9 months ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆62Updated 2 years ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆154Updated 2 years ago
• jsxlei / SCALEX
  Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
  ☆77Updated last week
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆69Updated 4 months ago
• labomics / midas
  ☆53Updated 3 weeks ago
• sallyqus / awesome-AI4SingleCell
  Must-read papers on deep learning based methodology paper for single cell data analysis
  ☆18Updated 4 years ago
• TencentAILabHealthcare / scTranslator
  ☆36Updated 9 months ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆43Updated 8 months ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆80Updated 2 years ago
• calico / scBasset
  Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.
  ☆97Updated 3 months ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆69Updated last year
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆69Updated 3 weeks ago
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆58Updated last week
• changwn / scFEA
  single cell Flux Estimation Analysis (scFEA) Try the below web server!
  ☆121Updated last year
• lanagarmire / Asgard
  ☆42Updated last year
• SmritiChawla / Precily
  ☆30Updated 2 years ago
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆59Updated last month
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆41Updated last year
• SydneyBioX / scJoint
  ☆59Updated last year
• azizilab / starfysh
  Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
  ☆116Updated 8 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆92Updated last month