OSU-BMBL / deepmapsLinks
Single-cell biological network inference using a heterogeneous graph transformer
☆76Updated 10 months ago
Alternatives and similar repositories for deepmaps
Users that are interested in deepmaps are comparing it to the libraries listed below
Sorting:
- ☆30Updated 2 years ago
- Cell clustering for spatial transcriptomics data with graph neural network☆64Updated 2 years ago
- ☆90Updated 2 years ago
- ☆35Updated 3 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 3 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆71Updated 3 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆49Updated 2 years ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆46Updated 2 years ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆77Updated last year
- overview of spatial datasets☆76Updated last year
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network☆106Updated 2 years ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆58Updated last year
- ☆47Updated 5 months ago
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Updated 3 years ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆146Updated last year
- ☆40Updated 3 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆62Updated 2 years ago
- Spatial-Linked Alignment Tool☆90Updated last year
- ☆59Updated 3 weeks ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆76Updated last year
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Updated 4 years ago
- ☆129Updated 3 years ago
- ☆18Updated 4 years ago
- A VGAE-based model to infer transcription factor regulatory network☆28Updated 3 years ago
- PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).☆62Updated last month
- ☆79Updated 4 months ago
- ☆145Updated last year
- SIMBA: SIngle-cell eMBedding Along with features☆66Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆79Updated 3 years ago
- Code for evaluating single cell foundation models scBERT and scGPT☆46Updated last year