a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool
☆99Jan 27, 2026Updated 6 months ago
Alternatives and similar repositories for bamnostic
Users that are interested in bamnostic are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python port of the R Bioconductor `seqLogo` package☆37Feb 20, 2026Updated 5 months ago
- pythonic wrapper for htslib☆24Aug 8, 2017Updated 9 years ago
- Library for visualising genomic features in Python.☆16May 12, 2017Updated 9 years ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆74Dec 4, 2024Updated last year
- A comprehensive and intelligent clinical phasing tool☆14Dec 3, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 11 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Per-base per-nucleotide depth analysis☆151May 9, 2026Updated 3 months ago
- Rust UMI Directional Adjacency Deduplicator☆15Nov 25, 2019Updated 6 years ago
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆905Updated this week
- ☆22Oct 6, 2023Updated 2 years ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 6 months ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Feb 13, 2018Updated 8 years ago
- Genomic interval operations on Pandas DataFrames☆194Aug 3, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆62Dec 27, 2022Updated 3 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆196Aug 1, 2026Updated last week
- Jasmine: SV Merging Across Samples☆260Dec 20, 2024Updated last year
- Very simple, pure python, BAM file reader☆80Feb 20, 2019Updated 7 years ago
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 5 years ago
- ☆35Jul 8, 2025Updated last year
- ☆15May 22, 2026Updated 2 months ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- base-accurate DNA sequence alignments using WFA and mashmap3☆222Updated this week
- ☆11Mar 4, 2025Updated last year
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆115Jun 6, 2021Updated 5 years ago
- Structural Variant Prediction Viewer☆35Jul 19, 2017Updated 9 years ago
- Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library☆33Updated this week
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- Configure workflow/pipeline tests using yaml files.☆70Aug 4, 2024Updated 2 years ago
- Quality of life improvements for Bioinformatics in Python.☆35Jul 29, 2026Updated 2 weeks ago
- genes and genomes at your fingertips☆411Jun 9, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Efficiently read and write sequencing data from Python☆70Oct 12, 2025Updated 10 months ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- A Jupyter wrapper for the igv.js library (representation of genomic data)☆26Feb 16, 2021Updated 5 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- vcfdist: Accurately benchmarking phased variant calls☆89Updated this week
- This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.☆20Oct 15, 2018Updated 7 years ago
- Bayesian haplotype-based mutation calling☆325Feb 13, 2026Updated 6 months ago