harbourlab / SparKLinks
Publication quality NGS track plotting
☆117Updated 4 months ago
Alternatives and similar repositories for SparK
Users that are interested in SparK are comparing it to the libraries listed below
Sorting:
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆124Updated last week
- Allele-specific alignment sorting☆61Updated 3 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 6 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 7 years ago
- HMMRATAC peak caller for ATAC-seq data☆98Updated last year
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆92Updated 3 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆116Updated last month
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆30Updated last week
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆124Updated last week
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆87Updated last year
- ☆75Updated 2 years ago
- ☆60Updated 6 months ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆111Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Quantification of transposable element expression using RNA-seq☆82Updated 2 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Updated 5 years ago
- Estimate locus specific human LINE-1 expression.☆39Updated 3 weeks ago
- Full-length transcriptome splicing and mutation analysis☆86Updated last year
- ☆49Updated 3 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆136Updated last year
- Software for Quantifying Interspersed Repeat Expression☆65Updated 3 years ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆107Updated 3 weeks ago
- release version☆58Updated 3 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- ☆64Updated 4 months ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- BISulfite-seq CUI Toolkit☆70Updated 4 months ago