rhpvorderman / sequaliLinks
Fast sequencing data quality metrics
☆27Updated 2 months ago
Alternatives and similar repositories for sequali
Users that are interested in sequali are comparing it to the libraries listed below
Sorting:
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆45Updated 2 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Fast FASTQ sample demultiplexing in Rust.☆64Updated 3 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 2 months ago
- Immuological gene typing and annotation for genome assembly☆37Updated 5 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- A library and tool for accessing remote BLOW5 files.☆24Updated 10 months ago
- Structural variant (SV) analysis tools☆36Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 6 months ago
- Location of public benchmarking; primarily final results☆18Updated 6 months ago
- a lexicographically-based GTF/GFF sorter☆36Updated 4 months ago
- expressions on VCFs☆85Updated 4 months ago
- v2.x of the microassembly based somatic variant caller☆23Updated last month
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆20Updated 5 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆27Updated 6 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Easy genomic regions for short-read variant calling☆35Updated 2 weeks ago
- gia: Genomic Interval Arithmetic☆65Updated last year
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Quality of life improvements for Bioinformatics in Python.☆30Updated 2 weeks ago
- Tumour-only somatic mutation calling using long reads☆27Updated 10 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆21Updated last week
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆30Updated 4 months ago
- Variant catalogue pipeline☆25Updated 3 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 10 months ago