Alternatives and similar repositories for sequali:

Users that are interested in sequali are comparing it to the libraries listed below

• JustinChu / ntsm
  This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…
  ☆29Updated 5 months ago
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆13Updated last year
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆62Updated 3 weeks ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 2 years ago
• nf-core / vscode-extensionpack
  A VSCode extension pack for nf-core developers.
  ☆15Updated last month
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆58Updated last week
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated 3 years ago
• fulcrumgenomics / python-snakemake-template
  A template repository for Snakemake pipepline(s) and a python command-line toolkit.
  ☆28Updated 3 weeks ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated 10 months ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆35Updated last month
• Psy-Fer / blue-crab
  crab go snap snap
  ☆40Updated 2 weeks ago
• mikolmogorov / pbclip
  A simple tool to fix PacBio fasta/q that was not properly split into subreads
  ☆15Updated 3 years ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated last week
• genepi / haplocheck
  Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies
  ☆18Updated last year
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆57Updated this week
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆28Updated this week
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 2 months ago
• kircherlab / CADD-SV
  CADD-SV – a framework to score the effect of structural variants
  ☆14Updated last month
• epi2me-labs / fastcat
  Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
  ☆37Updated last month
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆32Updated last year
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated 8 months ago
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆35Updated 2 weeks ago
• nanoporetech / pipeline-nanopore-denovo-isoforms
  Pipeline for de novo clustering of long transcriptomic reads
  ☆26Updated 3 years ago
• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆25Updated last week
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆33Updated this week
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆33Updated last week
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆40Updated 3 years ago
• fakedrtom / SVAFotate
  ☆39Updated 7 months ago
• genepi / cloudgene3
  A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.
  ☆16Updated 3 weeks ago
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated last year