Fast sequencing data quality metrics
☆33Apr 1, 2026Updated last week
Alternatives and similar repositories for sequali
Users that are interested in sequali are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated last month
- Efficiently read and write sequencing data from Python☆70Oct 12, 2025Updated 6 months ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- ☆14Sep 11, 2023Updated 2 years ago
- SV calling for diploid assemblies☆31Mar 22, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Explore and analyze biological sequence data☆17Aug 1, 2024Updated last year
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 5 years ago
- ☆13Apr 18, 2022Updated 3 years ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆14Apr 6, 2026Updated last week
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- Read CRAM v3 and v2 in node or in the browser☆18Mar 28, 2026Updated 2 weeks ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆27Feb 8, 2026Updated 2 months ago
- Convert vcf in parquet☆31Jan 23, 2025Updated last year
- Copy number caller for long read data including SNV utilization☆70Mar 31, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- POSTRE: Prediction Of STRuctural variant Effects☆28Jan 9, 2026Updated 3 months ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Jan 10, 2017Updated 9 years ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆42Mar 24, 2026Updated 3 weeks ago
- Sample Contamination Estimate from VCF☆20Nov 6, 2024Updated last year
- Remove human reads from a sequencing run☆48Apr 6, 2026Updated last week
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆108Jun 6, 2021Updated 4 years ago
- vcfdist: Accurately benchmarking phased variant calls☆85Feb 23, 2026Updated last month
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Mar 16, 2026Updated 3 weeks ago
- Fast FASTX parsing and k-mer methods in Rust☆210Apr 2, 2026Updated last week
- Automated Detection and Qualification of Differential Methylation☆16Nov 21, 2023Updated 2 years ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆24Aug 7, 2023Updated 2 years ago
- ☆27Dec 22, 2025Updated 3 months ago
- Per-base per-nucleotide depth analysis☆149Mar 16, 2026Updated 3 weeks ago
- Functions to compare a SV call sets against a truth set.☆30Jun 18, 2025Updated 9 months ago
- Correcting errors in noisy long reads using variation graphs☆51Nov 17, 2022Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A nextflow pipeline for calling exome CNVs☆13Feb 24, 2026Updated last month
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 5 years ago
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆19Jan 15, 2026Updated 2 months ago
- Minimal but speedy quality control for nanopore reads in Rust☆137Sep 16, 2024Updated last year
- LAVA: Lightweight Assignment of Variant Alleles☆17Dec 27, 2017Updated 8 years ago
- Tandem repeat genotyping with long reads☆36Sep 23, 2025Updated 6 months ago
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 3 months ago