rhpvorderman / sequali
Fast sequencing data quality metrics
☆25Updated this week
Alternatives and similar repositories for sequali:
Users that are interested in sequali are comparing it to the libraries listed below
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Automated Detection and Qualification of Differential Methylation☆11Updated last year
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- vembrane filters VCF records using python expressions☆58Updated this week
- crab go snap snap☆37Updated last month
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆35Updated 3 months ago
- Structural variant (SV) analysis tools☆35Updated 8 months ago
- Immuological gene typing and annotation for genome assembly☆32Updated this week
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆25Updated last week
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆21Updated this week
- Complex structural variant visualization for HiFi sequencing data☆26Updated 4 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 3 months ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month
- Params validation plugin for Nextflow pipelines☆48Updated 7 months ago
- Location of public benchmarking; primarily final results☆18Updated last month
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Fast FASTQ sample demultiplexing in Rust.☆61Updated this week
- A VSCode extension pack for nf-core developers.☆14Updated last week
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated this week
- ☆39Updated 6 months ago
- ☆29Updated 2 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 3 weeks ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆23Updated last month
- A library and tool for accessing remote BLOW5 files.☆24Updated 5 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated this week
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 5 months ago