rhpvorderman / sequaliLinks
Fast sequencing data quality metrics
☆27Updated 2 months ago
Alternatives and similar repositories for sequali
Users that are interested in sequali are comparing it to the libraries listed below
Sorting:
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆45Updated last month
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 2 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Fast FASTQ sample demultiplexing in Rust.☆63Updated 2 months ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- POSTRE: Prediction Of STRuctural variant Effects☆27Updated 5 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- expressions on VCFs☆85Updated 3 months ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Quality of life improvements for Bioinformatics in Python.☆30Updated last week
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 5 months ago
- Location of public benchmarking; primarily final results☆18Updated 5 months ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- bedtools-like functionality for interval sets in rust☆52Updated this week
- vembrane filters VCF records using python expressions☆61Updated this week
- A library and tool for accessing remote BLOW5 files.☆24Updated 9 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 8 months ago
- Structural variant (SV) analysis tools☆36Updated last year
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated this week
- Immuological gene typing and annotation for genome assembly☆37Updated 4 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆30Updated 3 months ago
- Fully automated generation of UCSC assembly hubs☆34Updated 10 months ago
- gia: Genomic Interval Arithmetic☆65Updated 11 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last week
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- The script presents a simple way to visualize features on human chromosome ideograms☆42Updated 3 months ago