asntech / intervene
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
☆139Updated last year
Alternatives and similar repositories for intervene:
Users that are interested in intervene are comparing it to the libraries listed below
- Command-line tool for the visualization of splicing events across multiple samples☆128Updated 9 months ago
- Check strandedness of RNA-Seq fastq files☆123Updated 2 years ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆130Updated 10 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆112Updated 2 months ago
- Analysis of Chromosome Conformation Capture data (Hi-C)☆99Updated 2 months ago
- Generate IGV style locus tracks from bigWig files in R☆158Updated 5 months ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 5 months ago
- Detecting sites of genomic enrichment☆190Updated last year
- Publication quality NGS track plotting☆111Updated 2 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆109Updated 2 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆43Updated last year
- A tool for bigWig files.☆119Updated 6 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆108Updated last year
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆105Updated 5 years ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆170Updated 10 months ago
- Visualizing transcript structure and annotation using ggplot2☆154Updated 8 months ago
- RNA-Seq analysis workflow☆104Updated 3 years ago
- Fast alignment and preprocessing of chromatin profiles☆199Updated 5 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆51Updated 2 months ago
- Relevant papers for CNV and SV approaches☆94Updated 5 months ago
- Allele-specific alignment sorting☆55Updated 2 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆219Updated this week
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆92Updated 5 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆127Updated 3 months ago
- A small-RNA sequencing analysis pipeline☆83Updated 2 weeks ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated last year
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆164Updated 4 months ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- Technology agnostic long read analysis pipeline for transcriptomes☆143Updated last year