asntech / interveneView external linksLinks
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
☆143Oct 28, 2023Updated 2 years ago
Alternatives and similar repositories for intervene
Users that are interested in intervene are comparing it to the libraries listed below
Sorting:
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated last year
- GWAS SNP Regulatory Analysis Tool☆17Mar 19, 2015Updated 10 years ago
- Bedfile perturbation tool☆17Sep 29, 2025Updated 4 months ago
- Jupyter notebook based genomic data visualization toolkit.☆249Dec 4, 2025Updated 2 months ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆268May 5, 2023Updated 2 years ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆73Dec 4, 2024Updated last year
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 9 years ago
- A toolkit for analyzing architectural stripes☆20Dec 1, 2024Updated last year
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆92Jan 28, 2025Updated last year
- R htmlwidget package for ideogram.js☆15Oct 26, 2022Updated 3 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆124Oct 3, 2025Updated 4 months ago
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12May 21, 2024Updated last year
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆136Jan 28, 2026Updated 2 weeks ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆94Jul 18, 2017Updated 8 years ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆199Jan 30, 2026Updated 2 weeks ago
- Gene orthologs for model organisms in a tidy data format☆14Sep 29, 2022Updated 3 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆294Nov 6, 2025Updated 3 months ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 8 months ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- WALT is a read mapping program for bisulfite sequencing DNA methylation studies.☆17Aug 23, 2022Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆397Jan 23, 2026Updated 3 weeks ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15May 22, 2019Updated 6 years ago
- A Python implementation of edgeR for differential expression analysis☆104Mar 21, 2019Updated 6 years ago
- genes and genomes at your fingertips☆407Sep 30, 2025Updated 4 months ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Nov 26, 2024Updated last year
- Interval data structure☆235Dec 5, 2024Updated last year
- A nextflow pipeline for calling exome CNVs☆13Updated this week
- Lab notebook for people who like the command line.☆11Jun 19, 2024Updated last year
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Feb 13, 2018Updated 8 years ago
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Jan 23, 2023Updated 3 years ago
- Detecting sites of genomic enrichment☆198May 8, 2023Updated 2 years ago
- Plot structural variant signals from many BAMs and CRAMs☆558Jul 13, 2024Updated last year
- python module to plot beautiful and highly customizable genome browser tracks☆864Jul 10, 2024Updated last year
- ☆22Oct 6, 2023Updated 2 years ago