bioforensics / rsidx
Library for indexing VCF files for random access searches by rsID
☆17Updated last year
Alternatives and similar repositories for rsidx:
Users that are interested in rsidx are comparing it to the libraries listed below
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 5 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆24Updated 4 years ago
- Build an index for your BAM Index (BAI)☆17Updated 9 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Sample Contamination Estimate from VCF☆19Updated 2 months ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- ☆21Updated last year
- Structural variant pipeline☆17Updated 4 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated last month
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆10Updated 11 months ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 4 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 2 years ago
- BED QC tool (in the making)☆16Updated 2 years ago
- Clonal reconstruction from HTS data☆10Updated 3 years ago
- Location of public benchmarking; primarily final results☆18Updated 2 years ago
- Easily run WDL workflows on GCP☆13Updated 3 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 2 years ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Updated 2 months ago