jts / briLinks
Bam Read Index - Extract alignments from a bam file by readname
☆28Updated last year
Alternatives and similar repositories for bri
Users that are interested in bri are comparing it to the libraries listed below
Sorting:
- Unfazed by genomic variant phasing☆27Updated last year
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 months ago
- Functions to compare a SV call sets against a truth set.☆30Updated 5 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Population-wide Deletion Calling☆35Updated 7 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 4 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last month
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 7 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- ☆14Updated 2 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 5 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- ☆12Updated 4 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 8 months ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 2 months ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Updated 3 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago