jts / briLinks
Bam Read Index - Extract alignments from a bam file by readname
☆27Updated last year
Alternatives and similar repositories for bri
Users that are interested in bri are comparing it to the libraries listed below
Sorting:
- Unfazed by genomic variant phasing☆27Updated last year
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 2 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- v2.x of the microassembly based somatic variant caller☆23Updated last month
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 4 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 6 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last month
- ☆23Updated 3 months ago
- ☆14Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 10 months ago
- Indel-aware consensus for aligned BAM☆21Updated 2 weeks ago
- Structural variant (SV) analysis tools☆36Updated last year
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- ☆12Updated 3 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 weeks ago
- Python bindings to minimap2☆16Updated 7 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- my PhD thesis☆36Updated 6 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago