sib-swiss / single-cell-trainingLinks
SIB course on single cell transcriptomics by mostly using the Seurat pipeline
☆84Updated 3 months ago
Alternatives and similar repositories for single-cell-training
Users that are interested in single-cell-training are comparing it to the libraries listed below
Sorting:
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- My youtube programming scripts☆58Updated 10 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- my notes for scATACseq analysis☆131Updated last year
- A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…☆105Updated 5 years ago
- Analysis pipeline for ATAC-seq data☆80Updated 2 years ago
- Interactively analyze single cell genomic data☆184Updated last month
- Code and data repository for the 2020 physalia course on single cell RNA sequencing.☆58Updated 5 years ago
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆199Updated 5 years ago
- ☆99Updated last month
- published papers with a lot of data☆74Updated 7 months ago
- Updated implementation of the GSEA-P R application for modern R distributions☆97Updated 3 years ago
- A continually expanding collection of cancer genomics notes and data☆109Updated last month
- Cell types enrichment analysis☆204Updated last year
- Efficient genotyping bi-allelic SNPs on single cells☆155Updated 3 weeks ago
- Integrative pathway enrichment analysis of multivariate omics data☆117Updated 4 months ago
- ☆63Updated last year
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 3 years ago
- The package wrapping the book, for deployment via the Bioconductor build system.☆95Updated last year
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- A Shiny web app for mapping datasets using Seurat v4☆138Updated last year
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆70Updated 5 months ago
- Basic workflow for ATAC-seq analysis☆90Updated last year
- Clustering scRNAseq by genotypes☆190Updated last week
- Introduction to bulk RNA-seq☆125Updated 6 months ago
- ☆88Updated 2 months ago
- ☆73Updated 3 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆92Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆182Updated last year
- This folder ultimately should contains all my project shown in my Youtube channel.☆40Updated 3 years ago