Aleksobrad / single-cell-rcc-pipelineLinks
Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcinoma Associated with Clinical Outcome Identified Using Single-Cell Protein Activity Inference." Includes code for VIPER protein activity inference pipeline
☆49Updated 3 years ago
Alternatives and similar repositories for single-cell-rcc-pipeline
Users that are interested in single-cell-rcc-pipeline are comparing it to the libraries listed below
Sorting:
- ☆45Updated 3 years ago
- ☆43Updated 10 months ago
- This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…☆46Updated last year
- ☆30Updated 2 years ago
- Construct Tumor Transition Zone Microenvironment☆44Updated 7 months ago
- ☆31Updated last year
- Codes used in pan-T cell analysis☆59Updated 2 years ago
- scripts associated with NAFLD-NASH project☆21Updated last year
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆78Updated 7 months ago
- ☆50Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆105Updated 2 months ago
- ☆42Updated 3 years ago
- ☆23Updated 3 months ago
- Codes for the scPLC project☆67Updated 2 years ago
- These are scripts for pan-cacner NK cells analyses.☆68Updated last year
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆58Updated 6 months ago
- ☆34Updated last year
- Mollecular Functional Portraits☆41Updated last year
- Integration of gut cell atlases☆25Updated 4 months ago
- Code repository for single cell RNA-seq☆35Updated 4 years ago
- ☆16Updated last year
- ☆19Updated last year
- Accurate and fast cell marker gene identification with COSG☆44Updated 3 months ago
- Visualize the results of cell-cell communication analysis☆22Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- These are scripts for pan-cacner B cells analyses.☆51Updated 11 months ago
- ☆24Updated last year
- A R package for advanced single cell data viz☆67Updated last year
- ☆52Updated 9 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆82Updated last year