Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcinoma Associated with Clinical Outcome Identified Using Single-Cell Protein Activity Inference." Includes code for VIPER protein activity inference pipeline
☆53Feb 16, 2026Updated 3 months ago
Alternatives and similar repositories for single-cell-rcc-pipeline
Users that are interested in single-cell-rcc-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for Protein activity analysis of single-cell RNAseq.☆86Dec 15, 2022Updated 3 years ago
- ☆50Jan 16, 2020Updated 6 years ago
- BioTIP: Biological Tipping-Point Identification and Characterization☆24Oct 20, 2025Updated 7 months ago
- Network Reverse Engineering through AP inference of Mutual Information☆88Mar 6, 2023Updated 3 years ago
- ☆48Jun 24, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆22Mar 6, 2023Updated 3 years ago
- A tool for semi-automatic cell type harmonization and integration☆120Mar 9, 2026Updated 2 months ago
- R code used to analyze single cell PDAC data☆42Jun 29, 2024Updated last year
- These are scripts for pan-cacner NK cells analyses.☆77Aug 18, 2023Updated 2 years ago
- R package for Pathway RespOnsive GENe activity inference☆124Jan 30, 2023Updated 3 years ago
- The codes and files for the study of subsolid nodules (SSN).☆15Oct 13, 2020Updated 5 years ago
- Human Muscle Ageing Cell Atlas☆21Mar 8, 2024Updated 2 years ago
- Single-Cell Clustering Assessment Framework☆110Oct 27, 2023Updated 2 years ago
- ☆28Jan 15, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Aug 17, 2022Updated 3 years ago
- Porting of Protein Activity and Pathway Inference to single cell and Python.☆14May 4, 2026Updated 3 weeks ago
- Code repository for single cell RNA-seq☆42Oct 12, 2020Updated 5 years ago
- Predictive Biomarker Modeling Framework (PBMF)☆24Apr 21, 2025Updated last year
- R package for Bioconductor submission☆40Dec 8, 2022Updated 3 years ago
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆26Jun 7, 2025Updated 11 months ago
- ☆10Jul 9, 2024Updated last year
- ☆58Feb 23, 2024Updated 2 years ago
- ☆17Mar 27, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Quantifying metabolism activity at the single-cell resolution☆179Feb 18, 2026Updated 3 months ago
- ☆21Feb 28, 2025Updated last year
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆56Jan 6, 2025Updated last year
- ☆13Jun 18, 2018Updated 7 years ago
- single cell and bulk RNASeq analysis scripts☆14Jan 13, 2022Updated 4 years ago
- FOR my learing☆12Feb 19, 2026Updated 3 months ago
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi…☆12Jan 20, 2018Updated 8 years ago
- These are code and scripts for MVI+ HCC scRNA-seq analysis.☆19Aug 24, 2023Updated 2 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Code used to process the data of the HBCA project☆33Feb 9, 2024Updated 2 years ago
- ☆26Aug 24, 2023Updated 2 years ago
- ☆11May 24, 2024Updated 2 years ago
- An R package to infer cell-cell interactions and clinical values in tumor immune microenvironment through gene pairs.☆25Jun 28, 2024Updated last year
- Molecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level☆14Jul 10, 2024Updated last year
- Identify cell type based on cell markers for single cell squencing☆12Jul 10, 2024Updated last year
- Hypoxia associated molecular feature analysis☆36Nov 19, 2019Updated 6 years ago