An assembly workflow for analysing data in the Earth Biogenome Project pilot project.
☆19Apr 27, 2026Updated last week
Alternatives and similar repositories for Earth-Biogenome-Project-pilot
Users that are interested in Earth-Biogenome-Project-pilot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Mar 12, 2020Updated 6 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆25Aug 20, 2020Updated 5 years ago
- ☆27Mar 26, 2024Updated 2 years ago
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 5 years ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.☆16Apr 30, 2026Updated last week
- Gene Family Annotation Workflow☆12Mar 26, 2024Updated 2 years ago
- A Nextflow pipeline for running synteny analysis.☆16Apr 24, 2026Updated 2 weeks ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆24Sep 23, 2024Updated last year
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 3 months ago
- A Rust implementation of sliding window stats over fastas.☆15Sep 2, 2025Updated 8 months ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 2 months ago
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 5 years ago
- pixi-to-conda-lock converts a pixi.lock file to a conda-lock.yml file☆15Jan 19, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Swiss-Army-Knife for Bioinformaticians☆15Updated this week
- A set of workflows written in Nextflow for Genome Annotation.☆46Jan 28, 2026Updated 3 months ago
- R package to draw syntenic plots in 3 different styles☆46Feb 2, 2026Updated 3 months ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 4 years ago
- Robust Eukaryotic Annotation Toolkit☆17Feb 28, 2025Updated last year
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- ☆12Jun 12, 2023Updated 2 years ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆21Sep 14, 2022Updated 3 years ago
- ☆15Jul 21, 2022Updated 3 years ago
- Development guidlines for software within NBIS.☆18Jul 1, 2025Updated 10 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆32May 1, 2026Updated last week
- Nextflow pipeline for genome annotation of protein-coding genes☆16Dec 21, 2023Updated 2 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Dec 29, 2022Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆71Nov 19, 2025Updated 5 months ago
- NBIS/Elixir course: Tools for Reproducible Research☆69Apr 26, 2026Updated last week
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Implementation of ToL genome assembly workflows☆29Apr 30, 2026Updated last week
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 8 years ago
- ☆17Oct 21, 2024Updated last year
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆67Jul 31, 2025Updated 9 months ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆50Apr 24, 2024Updated 2 years ago
- The Ensembl Core Perl API and SQL schema☆83Apr 7, 2026Updated last month
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Oct 15, 2023Updated 2 years ago