Popgen48 / scalepopgen
☆18Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for scalepopgen
- Likelihood-based Selective Sweep Detection☆35Updated last year
- ☆24Updated 7 years ago
- Tools and Utilities for msmc and msmc2☆45Updated last year
- Genome-wide scan for balancing selection using beta statistic☆27Updated last year
- ☆32Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆37Updated 3 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆19Updated 4 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆32Updated last year
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- Tutorial on using popular tools for learning about population history☆49Updated 6 years ago
- Transposable Elements MOvement detection using LOng reads☆19Updated this week
- Compute N50/NG50 and auN/auNG☆31Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆38Updated 4 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- methods for orphan gene prediction paper optimization☆25Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- ☆40Updated 6 months ago
- Population genetics analyses from NGS data☆25Updated 3 years ago
- General purpose population genetics software☆12Updated 5 years ago
- Graph-aware Retrieval of Selective Sweeps☆20Updated last month
- A tool for evaluate long-read de novo assembly results☆41Updated 2 months ago
- Genealogical Estimation of Variant Age (GEVA)☆27Updated 3 years ago
- Haplotype and population structure inference using neural networks.☆26Updated 3 months ago
- Computational Analysis of Gene Expression Evolution☆36Updated last week
- PhyloAcc a software to detect the changes of conservation of a genomic region☆29Updated 3 weeks ago
- ☆28Updated 2 months ago
- ☆31Updated 4 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆19Updated 4 months ago
- calling SVs from Blasr contig level alignments☆53Updated 6 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated 2 months ago