Popgen48 / scalepopgen
☆19Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for scalepopgen
- Likelihood-based Selective Sweep Detection☆35Updated last year
- ☆24Updated 7 years ago
- Tools and Utilities for msmc and msmc2☆46Updated last year
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆64Updated last month
- Transposable Elements MOvement detection using LOng reads☆19Updated this week
- Genome-wide scan for balancing selection using beta statistic☆27Updated last year
- Tutorial on using popular tools for learning about population history☆49Updated 6 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated this week
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆32Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Genealogical Estimation of Variant Age (GEVA)☆27Updated 3 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆39Updated 5 years ago
- Population genetics analyses from NGS data☆25Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- ☆32Updated 3 years ago
- calling SVs from Blasr contig level alignments☆53Updated 6 years ago
- Variant annotation and merging pipeline☆29Updated 3 weeks ago
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- General purpose population genetics software☆12Updated 5 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆29Updated last month
- ☆24Updated 2 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- Haplotype and population structure inference using neural networks.☆26Updated 3 months ago
- ☆30Updated 2 weeks ago
- methods for orphan gene prediction paper optimization☆25Updated 2 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆24Updated 4 years ago