rpianezza / GenomeDeltaLinks
Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you need is a reference genome and some short reads
☆17Updated 7 months ago
Alternatives and similar repositories for GenomeDelta
Users that are interested in GenomeDelta are comparing it to the libraries listed below
Sorting:
- Robust identification of orthologous Synteny with the Orthology Index☆23Updated this week
- A genome assembly assessment pipeline.☆37Updated last year
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆30Updated 5 months ago
- ☆30Updated 3 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- ☆21Updated 11 months ago
- ☆28Updated last year
- Domain based annotation of transposable elements☆19Updated 2 months ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Updated 2 months ago
- ☆24Updated last year
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆36Updated 5 months ago
- ☆40Updated 2 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated last year
- ☆27Updated 3 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆31Updated 6 months ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- ☆30Updated 6 months ago
- ☆12Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆23Updated 4 months ago
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- ☆41Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆19Updated last year
- Dynamic Elongation of a Genome Assembly Path☆21Updated last year
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆9Updated 4 months ago
- ☆22Updated 3 years ago