rpianezza / GenomeDeltaLinks
Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you need is a reference genome and some short reads
☆17Updated last year
Alternatives and similar repositories for GenomeDelta
Users that are interested in GenomeDelta are comparing it to the libraries listed below
Sorting:
- A genome assembly assessment pipeline.☆38Updated 2 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆37Updated this week
- ☆31Updated 9 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆32Updated 7 months ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- ☆33Updated 9 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Updated 2 months ago
- ☆21Updated last year
- Domain based annotation of transposable elements☆21Updated 3 months ago
- Dynamic Elongation of a Genome Assembly Path☆25Updated last month
- Centromics: visualing centromeres with multiple omics data☆25Updated 10 months ago
- ☆12Updated 2 years ago
- An Example of Subgenome Phasing for Complex Allopolyploidy☆14Updated 2 months ago
- Toolkit for evolutionary analyses of linkage groups☆33Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Updated 10 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆22Updated last year
- ☆16Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆20Updated last year
- ☆24Updated 2 months ago
- ☆28Updated 3 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- a Semi-automated pipeline for assembling T2T genome☆25Updated 3 months ago
- ☆32Updated last year
- Genome alignment and synteny plots☆33Updated 2 years ago
- ☆41Updated 2 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago