A Rust implementation of sliding window stats over fastas.
☆15Sep 2, 2025Updated 6 months ago
Alternatives and similar repositories for fasta_windows
Users that are interested in fasta_windows are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simple library/pipeline to generate and handle Hi-C data.☆39Feb 13, 2026Updated last month
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆26Feb 7, 2026Updated last month
- Toolkit for evolutionary analyses of linkage groups☆34Jul 17, 2024Updated last year
- A simple program for evaluate the assembly of a give genome.☆18Mar 3, 2023Updated 3 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 6 months ago
- de Bruijn Workflow using Integral information of Short pair End reads☆13Aug 21, 2024Updated last year
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated 7 months ago
- Analyzing Hi-C data in R with HiCExperiment objects☆16Mar 18, 2025Updated last year
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- Orchestrating Hi-C analysis with Bioconductor☆11Jul 11, 2025Updated 8 months ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆24Sep 23, 2024Updated last year
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated last year
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated last year
- Construct a Physical Map from Linked Reads☆18Updated this week
- Command Line Interface for Genomes on a Tree.☆13Mar 15, 2026Updated last week
- An assembly workflow for analysing data in the Earth Biogenome Project pilot project.☆15Mar 16, 2026Updated last week
- Components of genome sequence assembly tools☆21Mar 30, 2022Updated 3 years ago
- a GFA toolkit☆13Oct 4, 2024Updated last year
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆17Nov 29, 2024Updated last year
- Creating alignment plots from bam files☆120Mar 13, 2026Updated last week
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 9 months ago
- R package to draw syntenic plots in 3 different styles☆45Feb 2, 2026Updated last month
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆10Jul 14, 2023Updated 2 years ago
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆16Nov 5, 2025Updated 4 months ago
- ☆16Dec 25, 2024Updated last year
- A Nextflow pipeline for running synteny analysis.☆16Jun 17, 2025Updated 9 months ago
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 6 years ago
- ☆12Jul 19, 2019Updated 6 years ago
- ☆21Sep 14, 2022Updated 3 years ago
- defusion☆14Aug 24, 2021Updated 4 years ago
- Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps☆70Dec 16, 2022Updated 3 years ago
- Nextflow DSL2 pipeline to call variants on long read alignment.☆11Feb 27, 2026Updated 3 weeks ago
- Infering ancestral synteny with hierarchical orthologous groups☆38Oct 17, 2025Updated 5 months ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆37Sep 30, 2024Updated last year
- Implementation of ToL genome assembly workflows☆28Updated this week
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago