A Rust implementation of sliding window stats over fastas.
☆15Jun 4, 2026Updated last month
Alternatives and similar repositories for fasta_windows
Users that are interested in fasta_windows are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simple library/pipeline to generate and handle Hi-C data.☆42May 18, 2026Updated last month
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆26Jun 10, 2026Updated 3 weeks ago
- Toolkit for evolutionary analyses of linkage groups☆34Jul 17, 2024Updated last year
- A simple program for evaluate the assembly of a give genome.☆18Mar 3, 2023Updated 3 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆11Dec 7, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 9 months ago
- de Bruijn Workflow using Integral information of Short pair End reads☆13Aug 21, 2024Updated last year
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated 11 months ago
- Analyzing Hi-C data in R with HiCExperiment objects☆16Apr 29, 2026Updated 2 months ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Orchestrating Hi-C analysis with Bioconductor☆11Jul 11, 2025Updated 11 months ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆24Sep 23, 2024Updated last year
- Extracting paths from assembly graphs☆24Jun 22, 2026Updated last week
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Construct a Physical Map from Linked Reads☆19Apr 1, 2026Updated 3 months ago
- Command Line Interface for Genomes on a Tree.☆14Mar 15, 2026Updated 3 months ago
- An assembly workflow for analysing data in the Earth Biogenome Project pilot project.☆19May 19, 2026Updated last month
- Components of genome sequence assembly tools☆21Mar 30, 2022Updated 4 years ago
- a GFA toolkit☆13Oct 4, 2024Updated last year
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆18Nov 29, 2024Updated last year
- Creating alignment plots from bam files☆129Updated this week
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- R package to draw syntenic plots in 3 different styles☆46Feb 2, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆10Jul 14, 2023Updated 2 years ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆16Nov 5, 2025Updated 7 months ago
- ☆15Apr 16, 2026Updated 2 months ago
- A Nextflow pipeline for running synteny analysis.☆17Jun 25, 2026Updated last week
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 6 years ago
- ☆12Jul 19, 2019Updated 6 years ago
- ☆21Sep 14, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- defusion☆14Aug 24, 2021Updated 4 years ago
- Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps☆71Dec 16, 2022Updated 3 years ago
- Nextflow DSL2 pipeline to call variants on long read alignment.☆11Jun 13, 2026Updated 3 weeks ago
- Infering ancestral synteny with hierarchical orthologous groups☆38Oct 17, 2025Updated 8 months ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆37Sep 30, 2024Updated last year
- Implementation of ToL genome assembly workflows☆32May 11, 2026Updated last month