MonashBioinformaticsPlatform / RSeQCLinks
fork of RSeQC python RNAseq metrics suit of tools
☆49Updated 6 years ago
Alternatives and similar repositories for RSeQC
Users that are interested in RSeQC are comparing it to the libraries listed below
Sorting:
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- Allele-specific alignment sorting☆61Updated 2 years ago
- release version☆56Updated 3 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆67Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆120Updated 3 weeks ago
- ☆60Updated 5 months ago
- Publication quality NGS track plotting☆117Updated 2 months ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- A versatile aligning pipeline for bisulfite sequencing data☆66Updated 7 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆31Updated last month
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- ☆50Updated 7 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last month
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- FEELnc : FlExible Extraction of LncRNA☆92Updated 5 months ago
- HiC uniform processing pipeline☆62Updated 2 years ago
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- ☆49Updated 2 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- Tutorial Website☆60Updated 4 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 10 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆92Updated 3 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Reference data: BED files, genes, transcripts, variations.☆88Updated 8 years ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆52Updated 2 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆112Updated last year