Peak calling and differential methylation for MeRIP-Seq
☆36Oct 1, 2024Updated last year
Alternatives and similar repositories for exomePeak2
Users that are interested in exomePeak2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis of RNA epitranscriptome sequencing data with affinity-based shotgun sequencing approach☆10Apr 2, 2020Updated 6 years ago
- ☆13Jan 28, 2019Updated 7 years ago
- The project for analyzing differential methylation of MeRIP-seq data☆24Sep 5, 2023Updated 2 years ago
- A domain knowledge interface for m6A genomics☆11May 13, 2019Updated 6 years ago
- MeRIPseqPipe：An integrated analysis pipeline for MeRIP-seq data based on Nextflow.☆47May 20, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Interactive visulizations for track-based genomic data in R☆15Sep 9, 2024Updated last year
- A pipeline to process m6A-seq data and down stream analysis.☆45Aug 5, 2020Updated 5 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆21Apr 28, 2020Updated 6 years ago
- A Bioconductor R package for detecting cell-to-cell variably methylated regions (VMRs) from single-cell bisulfite sequencing leveraging p…☆10Jul 13, 2025Updated 9 months ago
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆53Jan 9, 2020Updated 6 years ago
- A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis☆35Sep 14, 2024Updated last year
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆23Jan 15, 2026Updated 3 months ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 6 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A tool to identify CLIP-seq peaks☆72Oct 31, 2025Updated 6 months ago
- ☆23Jan 11, 2019Updated 7 years ago
- CLIP-seq Analysis of Multi-mapped reads☆32Jul 20, 2021Updated 4 years ago
- DEPRECATED Tools for manipulating cell expression format (CEF) files☆12Oct 10, 2017Updated 8 years ago
- Spatial transcriptomics analyses and decoding in R☆24Oct 23, 2025Updated 6 months ago
- 该存储库，主要存放根据自己所掌握的NGS差异表达分析技术方法为主，具体的实验以及方案设计等将不会存放在此存储库。☆15May 19, 2020Updated 5 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆53Jan 27, 2019Updated 7 years ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated 11 months ago
- ☆11Sep 17, 2020Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆16Feb 19, 2026Updated 2 months ago
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Jul 8, 2022Updated 3 years ago
- ☆22Feb 20, 2022Updated 4 years ago
- 🔬 Genotyping tool for genome-edited samples using nanopore-targeted sequencing☆14Apr 11, 2026Updated 3 weeks ago
- ☆18Apr 17, 2025Updated last year
- RNA modifications detection from Nanopore dRNA-Seq data☆88Updated this week
- Create KEGG.db Package☆65Jan 29, 2026Updated 3 months ago
- R package for Methylation-based Inference of Regulatory Activity☆13Apr 9, 2020Updated 6 years ago
- See: https://www.iscb.org/ismb2018/3511#am1☆18Sep 10, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- TDNAscan: A Software to Identify Complete and Truncated T-DNA insertions☆20Apr 29, 2026Updated last week
- This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.☆19Sep 24, 2024Updated last year
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆14Jul 7, 2025Updated 10 months ago
- A program for summarising CpG methylation patterns☆20Sep 9, 2016Updated 9 years ago
- DataColor: Unveiling Biological Data Relationships through Distinctive Color Mapping☆17Nov 23, 2023Updated 2 years ago
- Differential methylation: Easy, Fast, Identification and ANnoTation☆19Dec 18, 2020Updated 5 years ago
- ☆17Jul 19, 2024Updated last year