NGSTools
☆16Mar 3, 2017Updated 9 years ago
Alternatives and similar repositories for NGSTools
Users that are interested in NGSTools are comparing it to the libraries listed below
Sorting:
- Subclonal Hierarchy Inference from Somatic Mutations☆21Feb 25, 2025Updated last year
- AWS lambda S3 + rust-htslib: A serverless bioinformatics example☆14Jun 7, 2022Updated 3 years ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆59Mar 8, 2018Updated 8 years ago
- pre-process illumina reads☆19Oct 27, 2022Updated 3 years ago
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Sep 15, 2021Updated 4 years ago
- Automatically exported from code.google.com/p/qsimscan☆14Oct 10, 2021Updated 4 years ago
- 🛜 A lightweight immune repertoire browser☆27Dec 10, 2019Updated 6 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Apr 20, 2023Updated 2 years ago
- Color DNA/RNA bases in terminal output☆21Aug 29, 2017Updated 8 years ago
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Sep 24, 2018Updated 7 years ago
- The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-t…☆23May 25, 2020Updated 5 years ago
- ☆11Feb 16, 2021Updated 5 years ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆25Apr 15, 2021Updated 4 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆53Jan 23, 2026Updated last month
- SRA python tools☆11Jun 9, 2021Updated 4 years ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆35Sep 20, 2022Updated 3 years ago
- Gene Ontology (GO) enrichment analysis☆12Aug 7, 2023Updated 2 years ago
- A program to detect denovo-variants using next-generation sequencing data.☆55Mar 30, 2020Updated 5 years ago
- HuBMAP Data Portal front end☆13Updated this week
- ☆13Sep 18, 2017Updated 8 years ago
- Gene orthologs for model organisms in a tidy data format☆14Sep 29, 2022Updated 3 years ago
- Python bindings for the TaxonKit library☆43Feb 2, 2026Updated last month
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Mar 7, 2026Updated 2 weeks ago
- Fast and flexible code for solving the inverse Ising/Potts inference problem☆28May 12, 2023Updated 2 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Apr 22, 2021Updated 4 years ago
- Mutation tracker for microbial genomes☆14Sep 30, 2020Updated 5 years ago
- ☆17Aug 1, 2023Updated 2 years ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- example ruffus pipeline☆18Sep 30, 2011Updated 14 years ago
- Scripts to generate and analyze afdb clusters☆11Sep 15, 2023Updated 2 years ago
- Lesson for the shell for genomics☆10Jan 12, 2021Updated 5 years ago
- Parser for Ghost Koala☆10Aug 23, 2018Updated 7 years ago
- My blog.☆16Aug 8, 2025Updated 7 months ago
- hs-blastn, a fast and accurate nucleotide-nucleotide sequences aligner.☆27Aug 12, 2020Updated 5 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- python stuff I use☆20Feb 16, 2026Updated last month
- Code that powers the giant LED MBTA map on my wall☆13Jun 3, 2018Updated 7 years ago
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆114Oct 12, 2022Updated 3 years ago
- Random collection of bioinformatics thingies☆19Mar 13, 2016Updated 10 years ago