Alternatives and similar repositories for decomprolute

Users that are interested in decomprolute are comparing it to the libraries listed below

• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆38Updated last week
• CyrilLagger / scDiffCom
  Difference in Intercellular Communication from scRNA-seq data
  ☆22Updated last month
• ambrosejcarr / seqc
  Single-Cell Sequencing Quality Control and Processing Software
  ☆30Updated 6 years ago
• ucsd-ccbb / NetColoc
  development of network co-localization tool
  ☆14Updated 4 months ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆22Updated last year
• jingxinfu / TIDEpy
  TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…
  ☆35Updated 3 years ago
• Teddy-XiongGZ / DeepGSEA
  ☆17Updated last year
• morrislab / TrackSig
  A framework to infer mutational signatures in cancer over time
  ☆56Updated 6 years ago
• marcjwilliams1 / neutralitytestr
  Testing a neutral evolution model on cancer sequencing data
  ☆10Updated 4 years ago
• SpatialTranscriptomicsResearch / std-nb
  Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018
  ☆22Updated 7 years ago
• khodosevichlab / CellAnnotatoR
  Automated marker-based annotation of cell types
  ☆13Updated 3 years ago
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆46Updated last year
• tianshilu / QBRC-Neoantigen-Pipeline
  QBRC Neoantigen calling pipeline with CSiN calculation embedded
  ☆24Updated 3 years ago
• NCICCGPO / gdan-tmp-models
  Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.
  ☆28Updated 7 months ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 8 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆44Updated 2 months ago
• ding-lab / PanCan_snATAC_publication
  ☆19Updated last year
• luisgls / SOPRANO
  SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions
  ☆11Updated last year
• KANG-BIOINFO / CellDrift
  CellDrift: temporal perturbation effects for single cell data
  ☆13Updated 2 years ago
• PCAWG-11 / Evolution
  Code accompanying The Evolutionary history of 2,658 cancers
  ☆46Updated 4 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated 2 years ago
• wwylab / DeMixT
  ☆36Updated last month
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• lima1 / sttkit
  Pipeline for SpatialTranscriptomics and 10X Visium data
  ☆21Updated 3 months ago
• HelenaLC / muscat-comparison
  ☆12Updated last year
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆44Updated 4 years ago
• icbi-lab / immune_deconvolution_benchmark
  Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…
  ☆43Updated 5 years ago
• satijalab / Mixscale
  ☆21Updated last month
• caleblareau / asap_reproducibility
  Reproducing all analyses and figures for the ASAP-seq paper
  ☆29Updated 4 years ago
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆48Updated last year