A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.
☆16Jul 6, 2026Updated 3 months ago
Alternatives and similar repositories for decomprolute
Users that are interested in decomprolute are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dataset package for facile training and testing of machine learning/AI algorithms that predict drug response in cancer model systems.☆21Updated this week
- Layered enrichment analysis tool enables facile enrichment using various statistics at once.☆20Jun 10, 2026Updated 4 months ago
- ☆11Aug 28, 2026Updated 2 months ago
- Source files for the SmartRoot software. Website: https://smartroot.github.io/☆16Jun 28, 2022Updated 4 years ago
- Highly accurate cell type proportion estimation with in silico data augmentation and deep neural networks☆18Jun 2, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Lung cancer 10X analysis☆11Dec 30, 2020Updated 5 years ago
- ☆11Sep 22, 2026Updated last month
- ☆15Sep 21, 2021Updated 5 years ago
- ☆12Feb 11, 2025Updated last year
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆23May 4, 2026Updated 5 months ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated 2 years ago
- ☆18Updated this week
- Python packaging for CPTAC data☆113Jun 24, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A comprehensive pipeline to analyze and visualize structural variants☆20Jan 28, 2020Updated 6 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆20Dec 8, 2020Updated 5 years ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆67Updated this week
- User-friendly bulk RNAseq deconvolution using simulated annealing☆18Feb 8, 2024Updated 2 years ago
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆21Oct 10, 2024Updated 2 years ago
- An open-source handbook of applied guidance and tools for sustainable software development and maintenance.☆26Updated this week
- PyTorch Implementation of CLEAN-Contact: Contrastive Learning-enabled Enzyme Functional Annotation Prediction with Structural Inference☆11May 29, 2024Updated 2 years ago
- ☆22Nov 9, 2023Updated 2 years ago
- Learning Kinetic Models from Time Series Proteomics and Metabolomics Data☆32Jun 21, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Pipeline for SpatialTranscriptomics and 10X Visium data☆22Jul 22, 2025Updated last year
- List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures☆19Aug 28, 2020Updated 6 years ago
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 6 months ago
- code implementing methods for pooling bulk and single cell data and FISH data for copy number deconvolution☆10Jan 31, 2020Updated 6 years ago
- A pipeline to generate a Deep Nerual Network cell type deconvolution model for bulk RNASeq samples from single cell experiment data☆12Nov 17, 2020Updated 5 years ago
- Leaf scale radiative transfer model based on spectral invariant properties - Matlab code☆13Nov 5, 2020Updated 5 years ago
- single-cell Contamination Detection and Correction☆19Jan 15, 2025Updated last year
- ☆16Aug 11, 2025Updated last year
- CellDrift: temporal perturbation effects for single cell data☆14Dec 3, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- single cell and bulk RNASeq analysis scripts☆13Jan 13, 2022Updated 4 years ago
- A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.☆12Mar 3, 2017Updated 9 years ago
- Pipeline to detect HLA disruption from WES and RNAseq data☆23Feb 17, 2025Updated last year
- cryo_fit1 source codes, test files, live at .../phenix-xxxx/modules☆10Mar 25, 2022Updated 4 years ago
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- Filters for Next Generation Sequencing☆13Oct 31, 2024Updated last year
- An R package to time somatic mutations☆72Dec 12, 2020Updated 5 years ago