PNNL-CompBio / decomprolute
A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.
☆16Updated last year
Alternatives and similar repositories for decomprolute:
Users that are interested in decomprolute are comparing it to the libraries listed below
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆23Updated 9 months ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- Computational identification of targets for CAR-T cell therapy in AML☆16Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆42Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated 5 months ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- ☆12Updated 5 years ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated this week
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆29Updated last month
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 2 months ago
- ☆15Updated 3 years ago
- tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.☆11Updated last year
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago
- ☆12Updated 11 months ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆30Updated 3 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 3 years ago
- Using BCR and expression for sequence embedding☆21Updated last month
- Detecting cancer subtypes with machine learning.☆10Updated 5 years ago