broadinstitute / gistic2Links
Genomic Identification of Significant Targets in Cancer (GISTIC), version 2
☆52Updated 3 years ago
Alternatives and similar repositories for gistic2
Users that are interested in gistic2 are comparing it to the libraries listed below
Sorting:
- An R package to time somatic mutations☆64Updated 4 years ago
- ☆78Updated 6 months ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆78Updated 4 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆60Updated last month
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆72Updated this week
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Updated last year
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- MutSig2CV from Lawrence et al. 2014☆33Updated 5 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- ☆39Updated 5 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆20Updated 2 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- GLASS consortium☆42Updated 5 years ago
- ☆72Updated 2 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 9 months ago
- ☆21Updated 2 weeks ago
- RNA editing tests☆17Updated 5 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆78Updated last year
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- Mutational signature analysis for low statistics SNV data☆64Updated last year
- R package containing useful functions for mutational signature analysis☆84Updated last week
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆80Updated 4 years ago