broadinstitute / gistic2
Genomic Identification of Significant Targets in Cancer (GISTIC), version 2
☆51Updated 3 years ago
Alternatives and similar repositories for gistic2:
Users that are interested in gistic2 are comparing it to the libraries listed below
- An R package to time somatic mutations☆61Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated 2 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 10 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆57Updated last month
- ☆38Updated 5 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated 11 months ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆65Updated 2 weeks ago
- ☆47Updated 4 months ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- ☆17Updated 3 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- A list of alternative splicing analysis resources☆43Updated last month
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆47Updated 9 months ago
- Tutorial Website☆59Updated 4 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆73Updated 2 weeks ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆58Updated last year
- ☆30Updated 6 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- R package containing useful functions for mutational signature analysis☆81Updated this week
- A computational workflow for exitron splicing identification☆12Updated 8 months ago
- Fork of the Polysolver project☆31Updated 5 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- ATAC-seq processing pipeline☆33Updated 3 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- ☆44Updated 6 years ago