JhuangLab / iseq
An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data
☆15Updated 6 years ago
Alternatives and similar repositories for iseq:
Users that are interested in iseq are comparing it to the libraries listed below
- Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目☆27Updated 5 years ago
- A shiny package for microbiome functional enrichment analysis☆38Updated 4 months ago
- 📊 An R package of RNA-seq workflow☆16Updated 2 years ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆18Updated 5 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated this week
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆16Updated 7 years ago
- A command line tool to compute mapping statistics from a BAM file☆23Updated 3 years ago
- R package for DNA methylation analysis☆18Updated 7 months ago
- ☆32Updated last year
- Visualization tool for genetic reassortment☆21Updated 4 months ago
- HOT regions paper☆11Updated 5 years ago
- R package wrapping bedtools☆38Updated last week
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆14Updated 4 years ago
- Genomic data interpretation and visualization Workshop☆19Updated last year
- ☆18Updated 8 months ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Updated 3 months ago
- ☆29Updated 5 months ago
- A toolkit developed by JhuangLab members to facilitate the analysis of next-generation sequencing (NGS) data.☆19Updated 6 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- Motif manipulation functions for R.☆28Updated 4 months ago
- ☆30Updated 4 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆28Updated 9 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 4 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆19Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- MeRIP-seq analysis pipeline arranged multiple alignment tools, peakCalling tools, Merge Peaks' methods and methylation analysis methods.☆21Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 10 months ago