JhuangLab / iseq
An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data
☆15Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for iseq
- Interactive R package to quantify, analyse and visualise alternative splicing☆35Updated this week
- A shiny package for microbiome functional enrichment analysis☆36Updated last week
- 📊 An R package of RNA-seq workflow☆15Updated 2 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆18Updated 5 years ago
- ORF Quantification pipeline for Alternative Splicing☆15Updated 3 years ago
- R package wrapping bedtools☆37Updated 2 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- fastx-utils using klib☆18Updated 4 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 8 months ago
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- R package for DNA methylation analysis☆17Updated 2 months ago
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆16Updated 6 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆11Updated last year
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Microbe-Metabolite INteractions-based metabolic profiles Predictor☆13Updated last year
- ☆25Updated last year
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Updated 4 years ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆33Updated 6 months ago
- ☆18Updated 3 months ago
- methylR: a single shiny solution from sequencer data to pathway analysis☆11Updated last week
- Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxfo…☆20Updated 5 years ago
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆22Updated last year
- Workflow for Sequenza, cellularity and ploidy☆17Updated 4 months ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 2 years ago
- ☆26Updated 3 weeks ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Updated last month
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆19Updated 6 years ago
- Motif manipulation functions for R.☆25Updated last month