scottzijiezhang / m6A-seq_analysis_workflow
A pipeline to process m6A-seq data and down stream analysis.
☆43Updated 4 years ago
Alternatives and similar repositories for m6A-seq_analysis_workflow:
Users that are interested in m6A-seq_analysis_workflow are comparing it to the libraries listed below
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆49Updated 5 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆55Updated last year
- release version☆51Updated 2 years ago
- Tutorial Website☆56Updated 4 years ago
- Basic workflow for ATAC-seq analysis☆73Updated 11 months ago
- Analysis pipeline for ATAC-seq Data☆60Updated 3 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 3 years ago
- An elegant package to visualize gene structures☆73Updated last year
- ATAC-seq processing pipeline☆32Updated 2 years ago
- ☆51Updated 6 years ago
- Links to ATAC-seq analysis tools☆60Updated 3 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated 9 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- An integrated platform for modeling gene-regulatory dynamics and networks☆31Updated 6 months ago
- A list of alternative splicing analysis resources☆41Updated 3 months ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆27Updated 4 years ago
- Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs☆47Updated last month
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆69Updated last month
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆49Updated 2 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆44Updated 6 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Analysis pipeline for ATAC-seq data☆44Updated last year
- Arabidopsis RNA_-seq downstream analysis shiny app☆31Updated 5 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆62Updated this week
- ☆77Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago