ENCODE-DCC / mirna-seq-pipelineLinks
☆17Updated 4 years ago
Alternatives and similar repositories for mirna-seq-pipeline
Users that are interested in mirna-seq-pipeline are comparing it to the libraries listed below
Sorting:
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Updated 3 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Updated last year
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆32Updated 3 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- ☆81Updated 7 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated last month
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Updated 8 years ago
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- Fork of the Polysolver project☆33Updated 6 years ago
- ☆38Updated 4 years ago
- MutSig2CV from Lawrence et al. 2014☆33Updated 5 years ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆76Updated last week
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆82Updated 4 years ago
- Somatic point mutation caller☆32Updated 7 months ago
- SingleCell Nanopore sequencing data analysis☆62Updated 6 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- Automate Absolute Copy Number Calling using 'ABSOLUTE' package☆41Updated 2 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 2 months ago
- direct comparison of circular and linear RNA expression☆23Updated 4 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 4 months ago
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated last year
- ☆44Updated 7 years ago