ENCODE-DCC / mirna-seq-pipelineLinks
☆17Updated 3 years ago
Alternatives and similar repositories for mirna-seq-pipeline
Users that are interested in mirna-seq-pipeline are comparing it to the libraries listed below
Sorting:
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆52Updated 3 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Updated 8 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆20Updated 2 years ago
- ☆38Updated 4 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆74Updated 11 months ago
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆32Updated 3 years ago
- ☆75Updated 4 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 3 months ago
- ☆13Updated 7 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- DCC/DAC methylation pipeline source☆56Updated 5 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆68Updated last month
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆41Updated 8 months ago
- BISulfite-seq CUI Toolkit☆24Updated 3 months ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Genome databases generation pipeline for ngs.plot and region_analysis.☆16Updated 9 years ago
- ☆17Updated 6 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Somatic point mutation caller☆31Updated 3 months ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 3 years ago