Alternatives and similar repositories for mirna-seq-pipeline:

Users that are interested in mirna-seq-pipeline are comparing it to the libraries listed below

• ENCODE-DCC / wgbs-pipeline
  ENCODE whole-genome bisulfite sequencing (WGBS) pipeline
  ☆29Updated 2 years ago
• broadinstitute / gistic2
  Genomic Identification of Significant Targets in Cancer (GISTIC), version 2
  ☆48Updated 2 years ago
• kundajelab / ataqc
  ☆17Updated 6 years ago
• biosinodx / SCcaller
  Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data
  ☆34Updated last month
• getzlab / MutSig2CV
  MutSig2CV from Lawrence et al. 2014
  ☆30Updated 4 years ago
• Wedge-lab / dpclust
  Dirichlet Process based methods for subclonal reconstruction of tumours
  ☆29Updated 3 months ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆39Updated last year
• jxzb1988 / MMQTL
  MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…
  ☆11Updated 2 years ago
• gxiaolab / REDITs
  RNA editing tests
  ☆16Updated 4 years ago
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆49Updated last month
• guigolab / sQTLseekeR2
  R package to detect splicing QTLs (sQTLs)
  ☆12Updated last year
• ChrisMaherLab / ClonEvol
  ☆13Updated 7 years ago
• HorvathLab / NGS
  Next-Gen Sequencing tools from the Horvath Lab
  ☆39Updated this week
• weng-lab / ENCODE-cCREs
  Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements
  ☆19Updated 2 weeks ago
• mccoy-lab / MAGE
  Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…
  ☆33Updated 6 months ago
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆42Updated 4 years ago
• NKI-GCF / XenofilteR
  Filtering of PDX samples for mouse derived reads
  ☆27Updated 2 years ago
• ENCODE-DCC / dna-me-pipeline
  DCC/DAC methylation pipeline source
  ☆55Updated 4 years ago
• nskvir / RepEnrich
  RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆26Updated 2 years ago
• dan-landau / IronThrone-GoT
  processes GoT amplicon data and generates a table of metrics
  ☆27Updated 2 years ago
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆31Updated 2 years ago
• broadinstitute / RNA_MUTECT_1.0-1
  ☆38Updated 4 years ago
• jianhong / trackViewer.documentation
  documentation for trackViewer
  ☆29Updated 5 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆37Updated 2 years ago
• dnaase / Bis-tools
  A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…
  ☆31Updated 3 years ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆61Updated last year
• natsuhiko / rasqual
  Robust Allele Specific Quantification and quality controL
  ☆38Updated 3 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆20Updated last year
• gerstung-lab / MutationTimeR
  An R package to time somatic mutations
  ☆60Updated 4 years ago
• maxsonBraunLab / cutTag-pipeline
  Pipeline for Cut&Tag analysis
  ☆17Updated this week