shunliubio / easym6ALinks
Process m6A/MeRIP-seq data in a single or batch job mode
☆20Updated 5 years ago
Alternatives and similar repositories for easym6A
Users that are interested in easym6A are comparing it to the libraries listed below
Sorting:
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Tutorial Website☆60Updated 4 years ago
- An R package to time somatic mutations☆64Updated 4 years ago
- RNA editing tests☆17Updated 5 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- ☆17Updated 6 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- Define regions in the genome☆33Updated 3 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 5 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs☆52Updated 3 months ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 6 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- MeRIP-seq analysis pipeline arranged multiple alignment tools, peakCalling tools, Merge Peaks' methods and methylation analysis methods.☆21Updated 4 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 2 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Updated 3 years ago
- ☆51Updated last year
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆23Updated 3 years ago
- snakemake workflow for post-processing scATACseq data☆22Updated 5 years ago
- direct comparison of circular and linear RNA expression☆23Updated 4 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago
- Motif manipulation functions for R.☆30Updated last month
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated last month
- Statistically Significant loops from HiChIP data☆46Updated last year
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago