Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq
☆52Jan 9, 2020Updated 6 years ago
Alternatives and similar repositories for merip_reanalysis_scripts
Users that are interested in merip_reanalysis_scripts are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package to conveniently run DESeq2, edgeR, and QNB for the detection of differential methylation in MeRIP/m6A-seq data.☆15Jan 15, 2020Updated 6 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆46Aug 5, 2020Updated 6 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆21Apr 28, 2020Updated 6 years ago
- MeRIPseqPipe：An integrated analysis pipeline for MeRIP-seq data based on Nextflow.☆47May 20, 2024Updated 2 years ago
- Peak calling and differential methylation for MeRIP-Seq☆34Oct 1, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15Jun 11, 2018Updated 8 years ago
- The project for analyzing differential methylation of MeRIP-seq data☆25Sep 5, 2023Updated 3 years ago
- MeRIP-seq analysis pipeline arranged multiple alignment tools, peakCalling tools, Merge Peaks' methods and methylation analysis methods.☆23Jun 18, 2021Updated 5 years ago
- CancerMIRNome - an interactive analysis and visualization database for miRNome profiles of human cancer☆12Aug 9, 2024Updated 2 years ago
- Code for "Single cell transcriptomes from human kidneys reveal the cellular identity of renal tumours"☆27Jun 5, 2018Updated 8 years ago
- 是基础也是综合(一系列对象及函数，需要细致的讲解)☆30Apr 9, 2016Updated 10 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆26May 30, 2023Updated 3 years ago
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆33May 12, 2020Updated 6 years ago
- ☆19May 15, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Aug 30, 2019Updated 7 years ago
- An R package for time course sequencing data analysis☆21May 8, 2023Updated 3 years ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆21Oct 12, 2022Updated 4 years ago
- a deep-learning-based framework for studying m6A☆21Jul 25, 2024Updated 2 years ago
- Scripts used to generate the data/figures contained in "Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human H…☆15Mar 10, 2023Updated 3 years ago
- A Perl/R pipeline for plotting metagenes☆41Mar 21, 2026Updated 7 months ago
- PCaDB - a comprehensive and interactive database for transcriptomes from prostate cancer population cohorts☆10Dec 29, 2021Updated 4 years ago
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA☆14Feb 16, 2023Updated 3 years ago
- ☆17Jan 9, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆30Jul 15, 2021Updated 5 years ago
- A Pipeline to Process RNAseq Data☆17Jun 15, 2022Updated 4 years ago
- ggRibo: Ribo-seq periodicity and other single-nucleotide resolution visualizer☆14Jul 17, 2026Updated 3 months ago
- A shell to facilitate loading / running CIBERSORT software in structured environments☆25May 9, 2018Updated 8 years ago
- 🧪 Optimized protocol for m6A-SAC-seq☆13Jun 16, 2025Updated last year
- ☆12May 24, 2022Updated 4 years ago
- scripts for analyzing data of macrophage development in human☆10Dec 8, 2019Updated 6 years ago
- An annotation package for ggplot plot☆120Nov 17, 2025Updated 11 months ago
- 学习笔记：我的第一个github仓库☆58Jan 13, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆32Aug 8, 2023Updated 3 years ago
- ☆35Jan 26, 2022Updated 4 years ago
- Project bulk/single-cell RNA-seq data to given LSI space☆12Jan 17, 2022Updated 4 years ago
- A quick recap of widely used differential analyses methods in R for RNA-seq experiments☆16Dec 7, 2024Updated last year
- ☆18Nov 19, 2022Updated 3 years ago
- ☆18Apr 17, 2025Updated last year
- ☆13Jan 4, 2026Updated 9 months ago