Alternatives and similar repositories for genomics:

Users that are interested in genomics are comparing it to the libraries listed below

• srp33 / ShinyLearner
  ShinyLearner: a software framework for performing benchmarks of machine-learning classification algorithms
  ☆18Updated 3 years ago
• mkanai / grimon
  R package for plotting 3D graphical visualization of multi-omics data.
  ☆22Updated 3 years ago
• seandavi / MachineLearningIntro
  Machine learning use cases for teaching
  ☆13Updated 7 years ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆19Updated 2 years ago
• vals / python-gprofiler
  ☆12Updated 6 years ago
• csoneson / iCOBRA
  Interactive benchmarking of ranking and assignment methods
  ☆15Updated 2 months ago
• kharchenkolab / sccore
  Core utilities for single-cell RNA-seq
  ☆12Updated 3 months ago
• kharchenkolab / vrnmf
  Volume-regularized NMF
  ☆17Updated 2 years ago
• cole-trapnell-lab / cicero
  ☆12Updated last year
• dcgerard / vicar
  Various Ideas for Confounder Adjustment in Regression
  ☆24Updated last year
• marcos-diazg / musica
  MuSiCa - Mutational Signatures in Cancer
  ☆23Updated last year
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated 9 months ago
• flo-compbio / monet
  Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces
  ☆39Updated 3 years ago
• mm-shah / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆13Updated 5 years ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆20Updated 2 months ago
• ibn-salem / sevenC
  7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
  ☆12Updated 6 years ago
• pachterlab / BBB
  Bioinformatics for Benched Biologists
  ☆22Updated 4 years ago
• NourMarzouka / multiclassPairs
  Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.
  ☆12Updated last year
• churchill-lab / scBASE
  A set of tools for accurate quantitation of single-cell allele-specific expression
  ☆12Updated 2 years ago
• uc-bd2k / GREP2
  GEO RNA-seq Experiments Processing Pipeline
  ☆21Updated 5 years ago
• bioturing / hera-t
  Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol
  ☆17Updated 3 years ago
• lutsik / CellTypeInferenceMethods
  A public list of computational methods for cell type inference from genome-scale DNA methylation data
  ☆12Updated 6 years ago
• hfang-bristol / XGR
  An R package to increase interpretability of genes and SNPs (eg identified from GWAS and eQTL mapping)
  ☆10Updated 2 years ago
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆20Updated 8 months ago
• csoneson / countsimQC
  countsimQC - Compare characteristic features of count data sets
  ☆27Updated 3 months ago
• csoneson / NativeRNAseqComplexTranscriptome
  Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"
  ☆19Updated 5 years ago
• kuijjerlab / PySNAIL
  Smooth-quantile Normalization Adaptation for Inference of co-expression Links
  ☆16Updated last year
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆18Updated 2 months ago
• AllenInstitute / scrattch.vis
  scRNA-seq data visualization from scrattch
  ☆26Updated 11 months ago