MicPie / genomics
Deep learning in genomics
☆18Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for genomics
- MuSiCa - Mutational Signatures in Cancer☆23Updated 10 months ago
- Genetics training camp☆21Updated 4 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆39Updated 3 years ago
- A python package for learning mutational signatures and their multidimensional genomic properties☆14Updated 4 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆43Updated last year
- iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data☆23Updated 5 years ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆9Updated 7 years ago
- A Julia package for extracting mutation signatures using topic models☆18Updated 2 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 5 months ago
- R package for plotting 3D graphical visualization of multi-omics data.☆22Updated 2 years ago
- iDEP: integrated Differential Expression & Pathway analysis☆15Updated 5 years ago
- ☆11Updated 9 months ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- Bayesian analysis of MPRA and other high-throughput genomic assays☆10Updated 4 years ago
- scRNA-seq data visualization from scrattch☆25Updated 7 months ago
- We have moved to https://github.com/limix/limix.☆24Updated 7 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- A comprehensive gene set function enrichment tool for multiple species.☆13Updated 4 years ago
- GWAS and rare variants tests at high speed using regenie☆11Updated 5 months ago
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 5 years ago
- Core pipeline of GenoML☆15Updated 4 years ago
- visualization tools for exon/junction coverage☆11Updated 4 years ago
- ☆33Updated 3 years ago
- ☆12Updated 5 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆22Updated 6 years ago
- Code and simulations using biologically annotated neural networks☆21Updated 3 years ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 3 years ago
- Building the constrained coding regions (CCR) model☆16Updated 5 years ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago