Alternatives and similar repositories for genomics

Users that are interested in genomics are comparing it to the libraries listed below

• marcos-diazg / musica
  MuSiCa - Mutational Signatures in Cancer
  ☆23Updated last year
• ngs-docs / 2021-GGG298
  Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis
  ☆12Updated 4 years ago
• klovens / juxtapose
  ☆10Updated 3 years ago
• Joyvalley / GWAS_Flow
  GPU accelerated GWAS framework based on TensorFlow
  ☆34Updated 2 years ago
• mvelinder / variant_prioritization
  Curated list of resources for variant prioritization
  ☆12Updated 7 months ago
• gagneurlab / RNAseq-ASHG
  RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows
  ☆17Updated 3 years ago
• kundajelab / gkmexplain
  Accompanying repository for GkmExplain paper
  ☆22Updated 4 years ago
• NourMarzouka / multiclassPairs
  Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.
  ☆12Updated 2 years ago
• shahcompbio / MultiModalMuSig.jl
  A Julia package for extracting mutation signatures using topic models
  ☆19Updated 3 years ago
• maxwellsh / DIGDriver
  Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.
  ☆26Updated 3 years ago
• seandavi / MachineLearningIntro
  Machine learning use cases for teaching
  ☆13Updated 8 years ago
• zd105 / AllEnricher
  A comprehensive gene set function enrichment tool for multiple species.
  ☆13Updated 5 years ago
• fusiontranscripts / FusionBenchmarking
  Toolkit for benchmarking fusion transcript predictions
  ☆19Updated 11 months ago
• astrazeneca-cgr-publications / JARVIS
  JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes
  ☆23Updated 7 months ago
• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 6 years ago
• slowkow / cellguide
  🧭 Navigate single-cell RNA-seq datasets in your web browser.
  ☆29Updated 2 years ago
• csoneson / NativeRNAseqComplexTranscriptome
  Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"
  ☆19Updated 5 years ago
• diazale / 1KGP_dimred
  Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.
  ☆20Updated 4 years ago
• ProSolo / prosolo
  ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.
  ☆22Updated 3 years ago
• shwhalen / ml-pitfalls
  Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
  ☆45Updated last year
• mandricigor / imrep
  ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
  ☆28Updated 5 years ago
• kircherlab / cfDNA
  cfDNA analysis workflow
  ☆21Updated 2 years ago
• heiniglab / DeepSom
  A CNN - based pipeline for calling somatic SNP and INDEL variants without a matched normal
  ☆11Updated 2 years ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆21Updated 3 years ago
• saezlab / flop
  FunctionaL Omics Processing platform
  ☆13Updated last year
• koesterlab / microphaser
  ☆12Updated last year
• chess-genome / chess
  Comprehensive Human Expressed SequenceS
  ☆18Updated 3 weeks ago
• NCBI-Hackathons / HLAClustRView
  R package specialized in HLA typing clustering and visualization based on specific similarity metrics
  ☆13Updated 5 years ago
• salbrec / seqQscorer
  ☆22Updated 2 months ago
• heyuan7676 / ts_eQTLs
  Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model
  ☆22Updated 4 years ago