MicPie / genomicsLinks
Deep learning in genomics
☆20Updated 6 years ago
Alternatives and similar repositories for genomics
Users that are interested in genomics are comparing it to the libraries listed below
Sorting:
- ☆10Updated 3 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis☆12Updated 4 years ago
- GPU accelerated GWAS framework based on TensorFlow☆34Updated 2 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10Updated 8 years ago
- ☆22Updated 3 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 4 years ago
- A comprehensive gene set function enrichment tool for multiple species.☆14Updated 5 years ago
- Genetics training camp☆21Updated 4 years ago
- Curated list of resources for variant prioritization☆12Updated 7 months ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 5 years ago
- Accompanying repository for GkmExplain paper☆23Updated 5 years ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆24Updated 5 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.☆20Updated 4 years ago
- ☆12Updated last year
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 5 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Updated 6 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Updated 3 years ago
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Updated 3 years ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆15Updated this week
- NGS duplicate marking☆19Updated 4 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 7 months ago
- mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens☆30Updated last year
- A CNN - based pipeline for calling somatic SNP and INDEL variants without a matched normal☆11Updated 2 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago