MicPie / genomics
Deep learning in genomics
☆18Updated 5 years ago
Alternatives and similar repositories for genomics:
Users that are interested in genomics are comparing it to the libraries listed below
- A python package for learning mutational signatures and their multidimensional genomic properties☆14Updated 4 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- GPU accelerated GWAS framework based on TensorFlow☆34Updated last year
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆39Updated 3 years ago
- iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data☆23Updated 5 years ago
- Code and simulations using biologically annotated neural networks☆21Updated 3 years ago
- Phenome Exome Association and Correlation Of Key phenotypes☆25Updated 3 years ago
- ShinyLearner: a software framework for performing benchmarks of machine-learning classification algorithms☆18Updated 3 years ago
- Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.☆20Updated 4 years ago
- ☆30Updated 3 years ago
- mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens☆28Updated 11 months ago
- Microsatellite Instability Classification using Multiple Instance Learning☆21Updated 4 months ago
- Bayesian modelling of DNA methylation heterogeneity at single-cell resolution☆20Updated 11 months ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 5 years ago
- Toolkit for benchmarking fusion transcript predictions☆18Updated 4 months ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- A Julia package for extracting mutation signatures using topic models☆18Updated 2 years ago
- ☆12Updated 5 years ago
- A rapido and lightweight method for PGS computation☆13Updated 3 months ago
- This is the R implementation of a robust correlation matrix estimator usefull in case of high-dimensional data to remove the bias. It al…☆13Updated 5 years ago
- R package for plotting 3D graphical visualization of multi-omics data.☆22Updated 2 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 7 months ago
- Distinguishing between generic and experiment-specific gene expression signals.☆12Updated last year
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- ☆18Updated last year
- ☆33Updated 3 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- A Tidy Framework to Hack Gene Expression Signatures☆19Updated 2 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Bioinformatics for Benched Biologists☆22Updated 4 years ago