Alternatives and similar repositories for PALMER

Users that are interested in PALMER are comparing it to the libraries listed below

• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆38Updated 9 years ago
• andrewSharo / StrVCTVRE
  StrVCTVRE, a structural variant classifier for exonic deletions and duplications
  ☆19Updated 2 years ago
• lganel / SVScore
  Prioritize structural variants based on CADD scores
  ☆29Updated 5 years ago
• arnederoeck / NanoSatellite
  Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.
  ☆32Updated 5 years ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆49Updated 4 years ago
• brwnj / covviz
  Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
  ☆58Updated 3 years ago
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆36Updated 2 years ago
• vibansal / hapcut
  program for haplotype phasing from sequence reads and related tools
  ☆25Updated 7 years ago
• mcfrith / tandem-genotypes
  ☆51Updated last year
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 9 months ago
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆59Updated 4 months ago
• EichlerLab / smrtsv2
  Structural variant caller
  ☆55Updated 4 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆51Updated 6 years ago
• dillonl / graphite
  Graphite - Graph-based variant adjudication
  ☆28Updated 5 years ago
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 5 years ago
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆30Updated 4 years ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated 2 years ago
• ljdursi / mergevcf
  Python package and routines for merging VCF files
  ☆29Updated 4 years ago
• DecodeGenetics / popSTR
  PopSTR - A Population based microsatellite genotyper
  ☆32Updated 2 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆40Updated last year
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆54Updated 5 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆42Updated 6 months ago
• talkowski-lab / svtk
  ☆35Updated 4 years ago
• TheJacksonLaboratory / SVE
  ☆51Updated 6 years ago
• benedictpaten / marginPhase
  ☆35Updated 5 years ago
• MeHelmy / princess
  ☆84Updated 11 months ago
• ridgelab / Kmer-SSR
  Fast, Accurate, and Complete SSR Detection in Genomic Sequences
  ☆11Updated 5 years ago
• WGLab / LinkedSV
  ☆20Updated 11 months ago
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆31Updated 5 months ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆43Updated 2 years ago