WeichenZhou / PALMERLinks
Pre-mAsking Long reads for Mobile Element inseRtion
☆18Updated this week
Alternatives and similar repositories for PALMER
Users that are interested in PALMER are comparing it to the libraries listed below
Sorting:
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Variant annotation and merging pipeline☆39Updated 4 months ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Structural variant caller☆55Updated 3 years ago
- ☆51Updated 6 years ago
- Population-wide Deletion Calling☆35Updated 7 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- ☆49Updated last year
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- SV genotyping with long reads☆40Updated 2 years ago
- Detection and genotyping of structural variants☆19Updated last month
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Updated last year
- ☆21Updated 6 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 7 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 3 years ago
- ☆83Updated 8 months ago
- ☆35Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- ☆36Updated last year
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 7 years ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Updated 6 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Updated 5 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- Phase reads, assemble haplotypes and detect SVs☆19Updated 5 years ago
- Long-read splice alignment with high accuracy☆63Updated last year
- Kmer based genotyper for short reads.☆23Updated 4 years ago