biotite-dev / gecosLinks
Generated color schemes for sequence alignment visualizations
☆18Updated 3 years ago
Alternatives and similar repositories for gecos
Users that are interested in gecos are comparing it to the libraries listed below
Sorting:
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Protein Sequence Annotation with Language Models☆23Updated 3 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆74Updated last month
- A PCR primer tool for DNA assembly flows☆33Updated last year
- Comprehensive Python client for the Uniprot REST API☆50Updated 3 months ago
- DeepECtransformer☆28Updated last year
- Python framework for doing ancestral sequence reconstruction☆41Updated last year
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆17Updated last year
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆35Updated 3 weeks ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆47Updated 6 years ago
- A Python package for mapping sequence aligned data onto protein structures☆36Updated 4 years ago
- Protein structure alignment and search algorithm☆70Updated last week
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆151Updated 9 months ago
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆40Updated 3 months ago
- Fast protein domain structure embedding+search tool☆26Updated 3 months ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 6 years ago
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆32Updated 2 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆45Updated 2 weeks ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆40Updated last week
- Deep learning embedding for nucleotide sequences☆19Updated 5 months ago
- Evolutionary conservation estimation of residues or nucleotides☆47Updated 3 years ago
- ☆28Updated last year
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆22Updated 4 months ago
- Code for LazyAF pipeline☆20Updated last year
- Multi-class signal peptide prediction and structure decoding model.☆94Updated 7 months ago
- Webserver and command line tool for annotating engineered plasmids☆14Updated 11 months ago
- ☆11Updated 9 months ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated last year
- Vector graphics cartoons from protein structure☆52Updated 3 years ago