Alternatives and similar repositories for gecos

Users that are interested in gecos are comparing it to the libraries listed below

• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆26Updated 3 weeks ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆75Updated 2 months ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆41Updated last year
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆24Updated 4 months ago
• amaurypm / pseqsid
  Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.
  ☆17Updated last year
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 6 years ago
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆36Updated 4 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆52Updated last week
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆22Updated 5 months ago
• jordisr / cellscape
  Vector graphics cartoons from protein structure
  ☆53Updated 3 years ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆49Updated 3 years ago
• wrf / pdbcolor
  Python code to color a PDB structure based on parameters from a multiple sequence alignment
  ☆32Updated 2 years ago
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆73Updated this week
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆36Updated this week
• esbgkannan / chumby
  A package for making tree-based visualizations for embedding vectors
  ☆10Updated 2 years ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆28Updated 2 years ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆155Updated 10 months ago
• tlawrence3 / amPEPpy
  ☆29Updated last year
• andyposbe / ColabFold-Pipeline-Toolkit
  The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.
  ☆16Updated last year
• Lattice-Automation / primers
  A PCR primer tool for DNA assembly flows
  ☆33Updated last year
• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆27Updated 9 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆95Updated 8 months ago
• jnoms / vpSAT
  Virus Protein Structural Analysis Toolkit
  ☆12Updated last year
• psipred / disopred
  Protein structural disorder prediction
  ☆19Updated 10 months ago
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆29Updated 2 months ago
• cusbg / MolArt
  MOLeculAR structure annoTator
  ☆33Updated last year
• Merck / bgc-pipeline
  ☆12Updated 10 months ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆30Updated last year