zwang-bioinformatics / GOGOView external linksLinks
An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms
☆18Mar 23, 2020Updated 5 years ago
Alternatives and similar repositories for GOGO
Users that are interested in GOGO are comparing it to the libraries listed below
Sorting:
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆22Sep 5, 2023Updated 2 years ago
- A comprehensive gene set function enrichment tool for multiple species.☆14Mar 23, 2020Updated 5 years ago
- A fork for the old hhsuite-2.0.16☆13Nov 27, 2020Updated 5 years ago
- Deep Generative Models for Drug Combination (Graph Set) Generation given Hierarchical Disease Network Embedding☆31Mar 25, 2023Updated 2 years ago
- Pathway-based sparse deep neural network☆19Nov 9, 2020Updated 5 years ago
- ☆17Aug 10, 2020Updated 5 years ago
- R package for functionally scoring phosphorylation sites☆22Nov 3, 2019Updated 6 years ago
- Unsupervised neural network for learning embeddings of GO terms.☆20Feb 19, 2022Updated 3 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Nov 30, 2022Updated 3 years ago
- ☆19Jul 8, 2021Updated 4 years ago
- ☆23Mar 20, 2023Updated 2 years ago
- a toolbox for the manipulation, modelling and analysis of molecular structures☆27Nov 27, 2025Updated 2 months ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated 6 months ago
- MCell Monte Carlo Simulator of Cellular Microphysiology☆37May 2, 2025Updated 9 months ago
- Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.☆30Jul 20, 2025Updated 6 months ago
- Documents used for workshops on single cell analysis☆27Feb 5, 2017Updated 9 years ago
- A tool for generating Python scripts to programmatically generate Jupyter notebooks.☆35Aug 12, 2020Updated 5 years ago
- The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installat…☆21Jan 3, 2013Updated 13 years ago
- ☆33Jun 1, 2024Updated last year
- ☆33Oct 2, 2025Updated 4 months ago
- A Python package for mapping sequence aligned data onto protein structures☆37May 26, 2021Updated 4 years ago
- This repository contains the installation zip file, user manual, example data, and source code for the PyXlinkViewer plugin for PyMOL v2☆10Jul 3, 2023Updated 2 years ago
- Similarity Network Fusion☆37Aug 12, 2015Updated 10 years ago
- ☆13Feb 27, 2024Updated last year
- Create a citation graph from pubmed data using R☆10Nov 4, 2016Updated 9 years ago
- Spacewalk is an application for displaying and interacting with super-resolution chromatin tracing data in 3D. SpaceWalk includes igv.js …☆11Nov 8, 2025Updated 3 months ago
- GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.☆11Mar 22, 2024Updated last year
- ☆12Nov 26, 2023Updated 2 years ago
- A LLM-based Agent Framework for Drug Discovery☆20Jan 11, 2026Updated last month
- Python implementation of TEISER also capable of using SHAPE structural probing data☆12Jan 7, 2025Updated last year
- EvoEF + evolutionary profile for ddG_bind prediction☆14Oct 17, 2025Updated 3 months ago
- Performs BLAST on compressed proteomic data.☆17Jun 15, 2015Updated 10 years ago
- The ChIP-Seq peak calling algorithm using convolution neural networks☆15Jan 18, 2021Updated 5 years ago
- Mutation Spectra Analysis☆10Mar 15, 2018Updated 7 years ago
- Analysis code and results for dreamlet☆10Jul 18, 2025Updated 6 months ago
- GLEE: Geometric Laplacian Eigenmap Embedding☆11Mar 7, 2020Updated 5 years ago
- ☆13Jan 29, 2024Updated 2 years ago
- ☆12Aug 3, 2023Updated 2 years ago
- Website and slides for intro to bioinformatics class at Fred Hutch☆13Jun 4, 2018Updated 7 years ago