Alternatives and similar repositories for GOGO

Users that are interested in GOGO are comparing it to the libraries listed below

• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆39Updated last week
• epaull / TieDIE
  Tied Diffusion for Subnetwork Discovery (TieDIE)
  ☆37Updated 3 years ago
• saketkc / pyseqlogo
  Python package to plot sequence logos
  ☆29Updated 2 years ago
• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆24Updated 4 months ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• GreiffLab / immuneSIM
  ☆38Updated last year
• uclahs-cds / package-moPepGen
  Multi-Omics Peptide Generator
  ☆28Updated last week
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆55Updated 5 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆28Updated 9 months ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆73Updated this week
• Guannan-Wang / GOMCL
  GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
  ☆22Updated 2 years ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆55Updated 6 months ago
• ML4GLand / EUGENe
  Elucidating the Utility of Genomic Elements with Neural Nets
  ☆70Updated 11 months ago
• GuipengLi / SharePathway
  a python package for KEGG pathway enrichment analysis with multiple gene lists.
  ☆37Updated 8 years ago
• mnielLab / netTCR
  predicting peptide and TCR interaction
  ☆20Updated 4 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆52Updated last month
• hart-lab / drugz
  DRUGZ software
  ☆24Updated 4 years ago
• dmaticzka / GraphProt
  GraphProt: modelling binding preferences of RNA-binding proteins
  ☆20Updated 7 years ago
• gagneurlab / MMSplice_MTSplice
  Tissue-specific variant effect predictions on splicing
  ☆42Updated 2 years ago
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆19Updated 2 years ago
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆31Updated 7 years ago
• psathyrella / partis
  B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
  ☆61Updated 2 weeks ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆46Updated 9 years ago
• kipoi / kipoiseq
  Standard set of data-loaders for training and making predictions for DNA sequence-based models.
  ☆82Updated last year
• KarchinLab / mhcnuggets
  MHC Class I and Class II neoantigen binding prediction
  ☆32Updated 3 months ago
• cstoeckert / iterativeWGCNA
  Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.
  ☆65Updated 4 years ago
• biothings / mygene.py
  mygene is an easy-to-use Python wrapper to access MyGene.Info services.
  ☆95Updated 10 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆45Updated 2 years ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆99Updated last year