Alternatives and similar repositories for awesome-community-bioinformatics

Users that are interested in awesome-community-bioinformatics are comparing it to the libraries listed below

• Eco-Flow / synteny
  A Nextflow pipeline for running synteny analysis.
  ☆15Updated 3 months ago
• willem-stock / CONCOMPRA
  consensus approach for community profiling with nanopore amplicon sequencing data
  ☆14Updated 11 months ago
• iferres / pagoo
  A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.
  ☆28Updated 2 years ago
• taxburst / taxburst
  sunburst plots for taxonomy - working to update Krona
  ☆40Updated last month
• bo1929 / krepp
  A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.
  ☆16Updated this week
• VGP / vgp-tools
  ☆28Updated 5 months ago
• sanger-tol / genomeassembly
  Implementation of ToL genome assembly workflows
  ☆20Updated this week
• guigolab / FA-nf
  Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow
  ☆18Updated 3 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 3 years ago
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆19Updated last week
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆34Updated 3 months ago
• IndexThePlanet / LoganSearch
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆32Updated 10 months ago
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆42Updated 11 months ago
• marbl / T2T-Browser
  Genome browser hub for the T2T genomes and resources
  ☆23Updated last week
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆45Updated last month
• citiususc / BigSeqKit
  BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
  ☆56Updated 2 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆30Updated last week
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆52Updated 4 months ago
• AllTheBacteria / Phylign
  Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…
  ☆12Updated last year
• pierrepeterlongo / back_to_sequences
  ☆45Updated last month
• SR-Martin / alvis
  ☆20Updated last year
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆13Updated 4 months ago
• ComparativeGenomicsToolkit / taffy
  This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files
  ☆28Updated 3 weeks ago
• HudsonAlpha / fmlrc2
  ☆47Updated 2 years ago
• snu-cdrc / gencube
  Efficient retrieval, download, and unification of genomic data from leading biodiversity databases
  ☆17Updated this week
• mathjeff / Mapper
  Genomic sequence aligner
  ☆26Updated last week
• wdecoster / kyber
  ☆21Updated 8 months ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated 10 months ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆24Updated 3 months ago
• wdecoster / phasius
  ☆15Updated 2 months ago