☆10Jul 23, 2020Updated 6 years ago
Alternatives and similar repositories for ptolemy
Users that are interested in ptolemy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Intra-species bacterial contamination detection☆26Jul 10, 2026Updated last month
- Radiative properties of gaseous species and soot☆16Mar 25, 2026Updated 5 months ago
- ☆18Apr 6, 2022Updated 4 years ago
- Deep learning in genomics☆20Jan 26, 2019Updated 7 years ago
- ☆11Jul 3, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Utilities designed for OpenFOAM, for reconstructing and interpolating fields at the post-processing stage.☆16Jan 3, 2016Updated 10 years ago
- Uses cDBG to count unitigs in bacterial populations☆19Feb 15, 2023Updated 3 years ago
- Graph based multi genome aligner☆49Sep 17, 2021Updated 4 years ago
- Example of SGTK application for E.coli dataset:☆32Jul 13, 2020Updated 6 years ago
- Python tool for the analysis and visualization of mobile genetic elements☆20May 26, 2025Updated last year
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- ☆17Jan 5, 2021Updated 5 years ago
- Python toolbox for phenotype analysis of arrayed microbial colonies☆17Feb 9, 2024Updated 2 years ago
- SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be use…☆22Jul 1, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated last year
- Hierarchical genome assembly: de novo bacterial genome assembly using high coverage short sequencing reads☆11Dec 27, 2016Updated 9 years ago
- A python package for optimizing processing pipelines using statistical design of experiments (DoE).☆25Jun 21, 2022Updated 4 years ago
- A Survey of Canteen Desserts at Institut Pasteur☆12Nov 18, 2022Updated 3 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11May 19, 2020Updated 6 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Mar 29, 2023Updated 3 years ago
- Multiplexed Shotgun Genotyping☆11Feb 15, 2022Updated 4 years ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Apr 27, 2018Updated 8 years ago
- Bitpacked sequence trait and implementation☆19Aug 19, 2026Updated last week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- This project is designed to find the potential modifications in bacterial genomes.☆15Nov 6, 2024Updated last year
- Pre-mAsking Long reads for Mobile Element inseRtion☆21Jul 24, 2026Updated last month
- ☆11Sep 16, 2020Updated 5 years ago
- A simple python library to identify the most likely strain from the population☆10Jan 11, 2024Updated 2 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 10 months ago
- Miscellaneous scripts for applications of PacBio systems☆27Apr 19, 2022Updated 4 years ago
- Searching for Horizontal Gene Transfer☆10Feb 22, 2020Updated 6 years ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Mar 22, 2021Updated 5 years ago
- Dynamic, adaptive sampling during nanopore sequencing☆39Jul 24, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆80Aug 30, 2016Updated 10 years ago
- ☆11Jan 24, 2023Updated 3 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Nov 25, 2017Updated 8 years ago
- C++ library handling Gaussian Mixure Models☆31Jun 19, 2022Updated 4 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- ☆33Jul 14, 2021Updated 5 years ago
- Convert HAL to VG☆24Updated this week