Alternatives and similar repositories for dbg:

Users that are interested in dbg are comparing it to the libraries listed below

• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆37Updated last year
• HongzheGuo / deBGA
  de Bruijn Graph-based read aligner
  ☆33Updated 6 years ago
• VGP / vgp-tools
  ☆28Updated last year
• aquaskyline / LRSIM
  10x Genomics Reads Simulator
  ☆45Updated last year
• bkehr / popins
  Population-scale detection of novel sequence insertions
  ☆27Updated 2 years ago
• jkbonfield / crumble
  Exploration of controlled loss of quality values for compressing CRAM files
  ☆34Updated 2 years ago
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆55Updated last year
• PacificBiosciences / pbbam
  PacBio BAM C++ library
  ☆21Updated last year
• GFA-spec / assembler-components
  Components of genome sequence assembly tools
  ☆21Updated 3 years ago
• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆69Updated 8 years ago
• dillonl / graphite
  Graphite - Graph-based variant adjudication
  ☆28Updated 4 years ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆26Updated 5 months ago
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆43Updated 2 years ago
• benedictpaten / marginPhase
  ☆35Updated 5 years ago
• rvaser / ra
  This repository is deprecated, please use the link to the right.
  ☆23Updated 6 years ago
• mariokostelac / ra-integrate
  DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)
  ☆18Updated 9 years ago
• sequencing / NxTrim
  Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
  ☆54Updated 6 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• brwnj / covviz
  Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
  ☆56Updated 3 years ago
• GregoryFaust / yaha
  yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…
  ☆21Updated 7 years ago
• arq5x / nanopore-scripts
  Various scripts and recipes for working with nanopore data
  ☆34Updated 8 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆48Updated 5 years ago
• kevlar-dev / kevlar
  Reference-free variant discovery in large eukaryotic genomes
  ☆41Updated 3 years ago
• vibansal / hapcut
  program for haplotype phasing from sequence reads and related tools
  ☆25Updated 6 years ago
• kuleshov / architect
  Scaffolding genomes using synthetic long read clouds
  ☆20Updated 8 years ago
• mattloose / RUscripts
  Scripts for implementing read until and other examples.
  ☆31Updated 5 years ago
• kdm9 / axe
  Rapid competitive read demulitplexer. Made with tries.
  ☆24Updated last year
• walaj / svlib
  Toolkit for extracting SVs from long sequences and benchmarking variant callers
  ☆13Updated 8 years ago
• tszalay / poreseq
  Error correction and variant calling algorithm for nanopore sequencing
  ☆26Updated 8 years ago