pmelsted / dbg
Naive de Bruijn graph implementation in python
☆35Updated 6 years ago
Related projects: ⓘ
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Scripts for implementing read until and other examples.☆31Updated 4 years ago
- 10x Genomics Reads Simulator☆45Updated 8 months ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 7 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated last month
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 5 years ago
- ☆28Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆52Updated last year
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- Error correction and variant calling algorithm for nanopore sequencing☆25Updated 8 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 6 years ago
- Graphite - Graph-based variant adjudication☆28Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆38Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 5 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Updated 8 years ago
- This repository is deprecated, please use the link to the right.☆23Updated 5 years ago
- tools for error correction and working with long read data☆44Updated 9 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 3 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆63Updated 5 years ago
- High-performance error correction for Illumina resequencing data☆68Updated 8 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 4 years ago
- Graph based multi genome aligner☆45Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Classify sequencing reads using MinHash.☆47Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆31Updated last year