Naive de Bruijn graph implementation in python
☆37Oct 2, 2017Updated 9 years ago
Alternatives and similar repositories for dbg
Users that are interested in dbg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Feb 18, 2020Updated 6 years ago
- de Bruijn CompAction in Low Memory☆23Jan 15, 2016Updated 10 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Compressed, associative, and exact hash table for k-mers☆11Oct 15, 2026Updated 2 weeks ago
- A demo implementation of Succinct de Bruijn Graphs.☆25Jun 30, 2013Updated 13 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A Python wrapper for the bbhash library for Minimal Perfect Hashing☆18Oct 26, 2025Updated last year
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆38Oct 1, 2026Updated last month
- A tool for visualisation of gene set over-representation analysis (GSOA).☆10Jun 27, 2019Updated 7 years ago
- ☆16Sep 18, 2026Updated last month
- modular k-mer count matrix and Bloom filter construction for large read collections☆90Sep 18, 2026Updated last month
- Recognizing HGT Events in Assemblies☆10May 12, 2026Updated 5 months ago
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆227Aug 11, 2026Updated 2 months ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆101Oct 1, 2026Updated last month
- k-mer counting software☆43Feb 8, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Python3 wrapper for GATB-Core.☆10Dec 16, 2017Updated 8 years ago
- Linear-time, low-memory construction of variation graphs☆20Oct 14, 2026Updated 2 weeks ago
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 4 years ago
- Paint genomes with taxa-specific k-mer probabilities☆16Apr 4, 2022Updated 4 years ago
- Partitioning and analysis methods for large, complex sequence datasets☆37Oct 17, 2018Updated 8 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆31Jan 19, 2021Updated 5 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 5 months ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 5 years ago
- A set of scripts for calculating pairwise SNP distance☆45Feb 19, 2026Updated 8 months ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated 2 years ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- FM-index representation of a de Bruijn graph☆27Aug 7, 2017Updated 9 years ago
- RNA-Skim: a rapid method for RNA-Seq quantification at transcript level☆19Sep 3, 2017Updated 9 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 7 years ago
- A comprehensive and intelligent clinical phasing tool☆15Dec 3, 2022Updated 3 years ago
- ☆16Jul 16, 2016Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Classify sequencing reads using MinHash.☆47Apr 6, 2020Updated 6 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 6 years ago
- Build phylogenomic datasets in seconds☆15Updated this week
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Core library of the Genome Analysis Toolbox with de-Bruijn graph☆67Feb 1, 2025Updated last year
- A SIMD-accelerated library to compute random minimizers☆49Oct 26, 2026Updated last week