olga24912 / SGTKLinks
Example of SGTK application for E.coli dataset:
☆32Updated 5 years ago
Alternatives and similar repositories for SGTK
Users that are interested in SGTK are comparing it to the libraries listed below
Sorting:
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago
- ☆28Updated 8 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated last year
- ☆15Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- 🗻 Visualization of genome/gene sequence synteny☆42Updated 2 years ago
- Reference genome quality scores☆21Updated 5 years ago
- Convert HAL to VG☆23Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 4 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 3 months ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 5 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 5 years ago
- Scaffolding with RNA-seq read alignment☆21Updated 7 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 5 months ago
- Python3 module for running MUMmer and reading the output☆33Updated 9 months ago
- ☆21Updated 6 years ago
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15Updated 4 years ago