olga24912 / SGTKLinks
Example of SGTK application for E.coli dataset:
☆32Updated 5 years ago
Alternatives and similar repositories for SGTK
Users that are interested in SGTK are comparing it to the libraries listed below
Sorting:
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 2 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 5 years ago
- Human pan-genome analysis pipeline☆30Updated 5 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- ☆28Updated 5 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆32Updated 10 months ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- 🗻 Visualization of genome/gene sequence synteny☆41Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated last month
- Correction of palindromes in long reads from PacBio and Nanopore☆14Updated 3 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 3 months ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 2 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆28Updated 3 weeks ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Reference genome quality scores☆21Updated 4 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆38Updated 2 years ago