A framework to score and analyze variant effects genome-wide using ChromBPNet models
☆20Mar 2, 2026Updated 5 months ago
Alternatives and similar repositories for variant-scorer
Users that are interested in variant-scorer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆244Jun 9, 2026Updated 2 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆60Jul 19, 2026Updated 3 weeks ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆92Sep 24, 2025Updated 10 months ago
- Repository to ZIP Plink2 LD files and have random access☆17Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆34Aug 7, 2026Updated last week
- systematic explanation of attribution-based mechanisms for regulatory genomics☆18May 29, 2026Updated 2 months ago
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Mar 31, 2022Updated 4 years ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆76Updated this week
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆16Nov 21, 2023Updated 2 years ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆36Jun 3, 2026Updated 2 months ago
- Deep learning models to predict enhancers in different Drosophila embryo tissues☆20Dec 10, 2023Updated 2 years ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆81Jun 4, 2026Updated 2 months ago
- Snakemake pipeline for microexon discovery and quantification☆21Jan 16, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Identifying transcription factor binding sites from neural network contribution scores☆25Nov 8, 2025Updated 9 months ago
- In-silico Saturation Mutagenesis implementation with 10x or more speedup for certain architectures.☆23Jun 18, 2022Updated 4 years ago
- FlashRNA - An Efficient Model for Regulatory Genomics☆18Oct 15, 2025Updated 10 months ago
- ☆19Mar 24, 2023Updated 3 years ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated 2 years ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Jan 22, 2025Updated last year
- ☆49May 7, 2026Updated 3 months ago
- Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models☆23May 22, 2026Updated 2 months ago
- Code & documentation for Multiomics and deep learning dissect regulatory syntax in human development (Liu*, Jessa*, Kim*, Ng*, et al, Nat…☆30Jul 17, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- pandasGWAS: a Python package for easy retrieval of GWAS Catalog data☆18Dec 19, 2025Updated 7 months ago
- The official repository for the ARSENAL model☆18Jul 3, 2026Updated last month
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆26Aug 20, 2024Updated last year
- ☆21Jun 19, 2026Updated last month
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆14Oct 16, 2025Updated 10 months ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆18Apr 8, 2021Updated 5 years ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Pipeline to run scE2G☆57Updated this week
- Machine learning methods for DNA sequence analysis.☆65Jul 20, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- physics-informed neural network based method for solving single-cell population dynamics☆17Jun 23, 2026Updated last month
- Biological sequence analysis for the modern age.☆308Updated this week
- ☆13Oct 17, 2021Updated 4 years ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆17Jun 25, 2025Updated last year
- TF analysis from epigenetic and Hi-C data☆19Apr 1, 2025Updated last year
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆23Jun 28, 2024Updated 2 years ago
- ☆13Jan 23, 2025Updated last year