Alternatives and similar repositories for memesuite-lite

Users that are interested in memesuite-lite are comparing it to the libraries listed below

• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆37Updated 2 weeks ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 3 years ago
• pachterlab / qcbc
  ☆20Updated 4 months ago
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆39Updated this week
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆16Updated 6 months ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆44Updated 3 months ago
• Kuanhao-Chao / OpenSpliceAI
  🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species
  ☆28Updated 3 months ago
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆19Updated last month
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆23Updated last year
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆54Updated 7 months ago
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated last year
• jsalignon / cactus
  Chromatin ACcessibility and Transcriptomics Unifying Software
  ☆17Updated 11 months ago
• vierstralab / genome-tools
  Processing and plotting tools for genomics data
  ☆21Updated last month
• Xinglab / rMATS-long
  ☆32Updated 9 months ago
• broadinstitute / longbow
  Annotation and segmentation of MAS-seq data
  ☆20Updated 2 years ago
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆31Updated 2 years ago
• Gregor-Mendel-Institute / bookend
  End-guided RNA assembler
  ☆14Updated last month
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆26Updated last year
• mortazavilab / lapa
  Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
  ☆31Updated last year
• COMBINE-lab / SalmonTools
  Useful tools for working with Salmon output
  ☆38Updated 5 years ago
• ulelab / ultraplex
  Ultra-fast 5' and 3' demultiplexer
  ☆28Updated last year
• nf-core / tumourevo
  Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …
  ☆17Updated 2 weeks ago
• vaquerizaslab / chess
  Comparison of Hi-C Experiments using Structural Similarity.
  ☆27Updated 2 years ago
• a2iEditing / deNovo-Detect
  ☆13Updated 3 years ago
• songlab-cal / scquint
  ☆18Updated last year
• guigolab / LyRic
  Long RNA-seq analysis workflow
  ☆20Updated 3 weeks ago
• gagneurlab / absplice
  ☆39Updated 3 months ago
• mskilab-org / nf-jabba
  ☆14Updated 4 months ago
• Xinglab / isoCirc
  isoCirc
  ☆10Updated last year