jmschrei / memesuite-liteLinks
A lightweight reimplementation of some of the algorithms in the MEME suite in Python.
☆22Updated last month
Alternatives and similar repositories for memesuite-lite
Users that are interested in memesuite-lite are comparing it to the libraries listed below
Sorting:
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated this week
- simplified cellranger for long-read data☆19Updated 2 months ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 9 months ago
- Comprehensive and scalable differential splicing analyses☆17Updated 7 months ago
- ☆20Updated 5 months ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- ☆18Updated last year
- ☆19Updated 2 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 7 months ago
- Two pass alignment for long reads☆22Updated 4 years ago
- ☆39Updated 3 months ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆17Updated last year
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆20Updated 8 months ago
- ☆33Updated 10 months ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆22Updated 2 months ago
- Blazing fast toolkit to work with .hic and .cool files☆41Updated this week
- scover☆24Updated last year
- End-guided RNA assembler☆15Updated 2 months ago
- Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆18Updated last week
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Isoform-level functional RNA-Seq analysis 🧬☆34Updated last week
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Updated 4 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated last year
- Chromatin domains bursting with flavor☆12Updated 5 years ago