Alternatives and similar repositories for memesuite-lite

Users that are interested in memesuite-lite are comparing it to the libraries listed below

• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆17Updated 4 months ago
• Kuanhao-Chao / OpenSpliceAI
  🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species
  ☆21Updated last week
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 3 years ago
• jsalignon / cactus
  Chromatin ACcessibility and Transcriptomics Unifying Software
  ☆16Updated 8 months ago
• Gregor-Mendel-Institute / bookend
  End-guided RNA assembler
  ☆15Updated 3 months ago
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• Xinglab / rMATS-long
  ☆28Updated 7 months ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆36Updated last month
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆19Updated last month
• ngs-docs / 2021-GGG298
  Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis
  ☆12Updated 4 years ago
• flemingtonlab / SpliceTools
  ☆17Updated 11 months ago
• pachterlab / qcbc
  ☆20Updated last month
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆18Updated this week
• XueyiDong / LongReadBenchmark
  Benchmarking long-read RNA-seq analysis tools
  ☆27Updated 5 months ago
• Oshlack / Slinker
  Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.
  ☆19Updated 3 years ago
• nch-igm / snvstory
  Rapid and accurate ancestry inference using SNVs.
  ☆19Updated this week
• sims-lab / CapCruncher
  Analysis tool for NG-Capture-C, Tri-C and Tiled-C data
  ☆9Updated 2 weeks ago
• NatPRoach / c_elegans_dRNAseq_analysis
  Scripts used in the analysis of C elegans dRNAseq data
  ☆14Updated last year
• tkzeng / GeneBayes
  ☆25Updated 3 weeks ago
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆25Updated last month
• matsengrp / phip-flow
  A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets
  ☆13Updated 5 months ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆43Updated last month
• snu-cdrc / gencube
  Efficient retrieval, download, and unification of genomic data from leading biodiversity databases
  ☆17Updated this week
• kuijjerlab / PySNAIL
  Smooth-quantile Normalization Adaptation for Inference of co-expression Links
  ☆16Updated 2 years ago
• SFGLab / ConsensuSV-pipeline
  Automatised pipeline of ConsensuSV workflow.
  ☆23Updated last year
• hoffmangroup / umap
  ☆26Updated last week
• hemberg-lab / MicroExonator
  Snakemake pipeline for microexon discovery and quantification
  ☆20Updated 6 months ago
• finkelsteinlab / freebarcodes
  FREE Divergence Error-Correcting DNA Barcodes
  ☆9Updated 7 years ago
• gagneurlab / splicemap
  ☆21Updated 9 months ago
• songlab-cal / scquint
  ☆17Updated last year