Alternatives and similar repositories for EPCOT

Users that are interested in EPCOT are comparing it to the libraries listed below

• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆60Updated 5 months ago
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer links prioritization
  ☆44Updated 9 months ago
• jzhoulab / puffin_manuscript
  ☆17Updated 10 months ago
• mostafavilabuw / EnformerAssessment
  ☆24Updated last year
• mhorlacher / rbpnet
  ☆18Updated last year
• visze / sequence_cnn_models
  ☆13Updated 7 months ago
• ma-compbio / Higashi
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
  ☆88Updated 11 months ago
• HelloWorldLTY / UKBioLM
  ☆21Updated 4 months ago
• johahi / borzoi-pytorch
  Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
  ☆72Updated this week
• shirondru / enformer_fine_tuning
  For fine-tuning Enformer using paired WGS & gene expression data
  ☆22Updated 2 weeks ago
• ni-lab / personalized-expression-benchmark
  Evaluating genomic sequence models for explaining personalized expression variation
  ☆19Updated last year
• karbalayghareh / GraphReg
  Chromatin interaction aware gene regulatory modeling with graph attention networks
  ☆27Updated 2 years ago
• wassermanlab / ExplaiNN
  ExplaiNN: interpretable and transparent neural networks for genomics
  ☆49Updated 5 months ago
• xiongxslab / Translatomer
  ☆24Updated this week
• yal054 / epiformer
  ☆26Updated 4 months ago
• ketringjoni / SuPreMo
  Pipeline for generating reference and perturbed sequences for input into predictive models.
  ☆11Updated 10 months ago
• shtoneyan / gopher
  Toolset for training quantitative sequence to function models.
  ☆23Updated last year
• jzhoulab / puffin
  deep learning-inspired explainable sequence model for transcription initiation
  ☆97Updated 6 months ago
• d-laub / basenji2-pytorch
  PyTorch implementation of Basenji2.
  ☆16Updated 4 months ago
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆17Updated 3 years ago
• madilabcode / scNET
  ☆53Updated this week
• dylkot / pyWNN
  Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)
  ☆18Updated 3 years ago
• jmschrei / bpnet-lite
  This repository hosts a minimal version of a Python API for BPNet.
  ☆49Updated 2 weeks ago
• kaizhang / single-cell-benchmark
  ☆10Updated 2 years ago
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆109Updated 2 years ago
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆78Updated last year
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆63Updated 10 months ago
• de-Boer-Lab / random-promoter-dream-challenge-2022
  ☆32Updated 7 months ago
• kundajelab / DART-Eval
  ☆41Updated last month
• altoslabs / perturbench
  ☆37Updated 3 months ago