liu-bioinfo-lab / EPCOT
☆17Updated 10 months ago
Related projects: ⓘ
- ☆13Updated last month
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆17Updated last year
- Code for reproducing the Sei manuscript results☆15Updated 2 years ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆22Updated this week
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆18Updated 5 months ago
- Toolset for training quantitative sequence to function models.☆21Updated 6 months ago
- ☆15Updated 5 months ago
- ☆11Updated 5 months ago
- ☆14Updated last month
- Evaluating genomic sequence models for explaining personalized expression variation☆13Updated 9 months ago
- Single-cell Hi-C data analysis toolbox☆23Updated 3 years ago
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆11Updated last month
- A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts☆9Updated last year
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆25Updated 7 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆76Updated 6 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆30Updated 6 months ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated last year
- ☆33Updated last year
- multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning☆29Updated 2 years ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆22Updated 7 months ago
- ☆20Updated 4 months ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆40Updated last year
- ☆55Updated this week
- ☆28Updated 7 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆53Updated last year
- ☆36Updated last year
- ☆28Updated 10 months ago
- Knowledge-primed neural networks☆34Updated last year
- PyTorch implementation of Basenji2.☆12Updated last year
- ☆10Updated last year