Implementation of eBWT using Prefix-free parse (PFP)
☆14Jul 14, 2025Updated last year
Alternatives and similar repositories for PFP-eBWT
Users that are interested in PFP-eBWT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.☆14May 11, 2018Updated 8 years ago
- Wavelet tree based on a fixed block boosting technique☆16May 18, 2021Updated 5 years ago
- A cheatsheet for most common Stringology tasks☆14Apr 14, 2021Updated 5 years ago
- Efficient construction of the BWT using string compression☆22May 26, 2026Updated last month
- Paper Collection for Stringologists☆17Jul 10, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Simple succinct data structures (in Rust)☆55Apr 18, 2026Updated 3 months ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Apr 25, 2022Updated 4 years ago
- Collection of Suffix Array Construction Algorithms (SACAs)☆35Mar 29, 2019Updated 7 years ago
- C++ Implementation of Zip Trees☆14Nov 5, 2022Updated 3 years ago
- linear time suffix array construction algorithm☆12Oct 28, 2016Updated 9 years ago
- A C++ library implementing fast language models estimation using the 1-Sort algorithm.☆16May 18, 2023Updated 3 years ago
- TU DOrtmund lossless COMPression framework☆19Sep 7, 2024Updated last year
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Method to measure the amount of allocated memory of a program at run-time.☆71Apr 4, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Jul 14, 2026Updated last week
- R-Index-F Library for Pattern Matching☆12Aug 8, 2024Updated last year
- A space-efficient compressor based on the Re-Pair grammar☆12Apr 6, 2017Updated 9 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- Succinct Data Structure Library 3.0☆107Jul 1, 2026Updated 3 weeks ago
- ⚙️🛠️ Essential C++ utilities.☆14Mar 9, 2026Updated 4 months ago
- vector illustrations of BWT based searching on small strings☆16Apr 29, 2019Updated 7 years ago
- String Visualizer☆12Dec 18, 2025Updated 7 months ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Implementation of the sacabench framework☆19May 15, 2021Updated 5 years ago
- Lightweight resources assembly algorithm☆19May 17, 2017Updated 9 years ago
- Universe-sliced indexes in C++.☆18Jan 8, 2023Updated 3 years ago
- GBZ file format for pangenome graphs☆46Apr 18, 2026Updated 3 months ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Mar 13, 2025Updated last year
- Incremental construction of FM-index for DNA sequences☆72Jun 12, 2024Updated 2 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆57Mar 13, 2025Updated last year
- Practical Dynamic de Bruijn Graphs☆18Oct 1, 2020Updated 5 years ago
- gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]☆27Feb 16, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An optimal space run-length Burrows-Wheeler transform full-text index☆69May 31, 2023Updated 3 years ago
- K-means clustering for large single-cell datasets☆13Feb 10, 2026Updated 5 months ago
- Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]☆27Dec 2, 2025Updated 7 months ago
- Generalized enhanced suffix array construction in external memory [CPM'13, AMB 2017]☆17Aug 9, 2021Updated 4 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- FQSqueezer - FASTQ compressor based on k-mer statistics☆18Feb 24, 2024Updated 2 years ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 7 years ago