davidecenzato / PFP-eBWTLinks
Implementation of eBWT using Prefix-free parse (PFP)
☆14Updated 10 months ago
Alternatives and similar repositories for PFP-eBWT
Users that are interested in PFP-eBWT are comparing it to the libraries listed below
Sorting:
- Wavelet tree based on a fixed block boosting technique☆16Updated 4 years ago
- R-Index-F Library for Pattern Matching☆13Updated 10 months ago
- modified from gitlab.com/manzai/Big-BWT to support fasta files☆9Updated 4 months ago
- Efficient construction of the BWT using string compression☆18Updated 2 weeks ago
- A cheatsheet for most common Stringology tasks☆15Updated 4 years ago
- vector illustrations of BWT based searching on small strings☆16Updated 6 years ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆13Updated this week
- Fast and cache-efficient full-text pangenome index☆29Updated this week
- Implementation of a Backpack Quotient Filter☆12Updated 2 weeks ago
- Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.☆15Updated 7 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated last year
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Updated 3 months ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆65Updated 2 years ago
- A tool for merging large BWTs☆26Updated 4 years ago
- Prefix Free Parsing☆8Updated last year
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]☆27Updated 4 months ago
- ☆14Updated 5 years ago
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆50Updated last year
- ☆25Updated 4 years ago
- MEM mapper prototype☆13Updated 4 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆12Updated 6 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Updated 3 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆25Updated last year
- Optimal distance lower bound k-mer sampling.☆12Updated last year
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Updated 3 years ago
- Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]☆26Updated 2 years ago
- Efficient, parallel compression for terabyte-scale data☆46Updated last month
- ☆25Updated 4 years ago